KoslickiLab DiversityOptimization issues - Githubissues

KoslickiLab / DiversityOptimization

Minimizing biological diversity to improve microbial taxonomic reconstruction

MIT License

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Large matrices and scipy.optimize.nnls not working with sparse matrices

#14 dkoslicki opened 4 years ago
2
test issue

#13 dkoslicki closed 4 years ago
0
Benchmark performance on simulated data

#12 dkoslicki closed 4 years ago
11
Apply to real data

#11 dkoslicki opened 4 years ago
0
Benchmark WGS using OPAL and CAMI data

#10 dkoslicki opened 4 years ago
0
Benchmark 16S vs QIIME

#9 dkoslicki opened 4 years ago
14
Convert WGS output to CAMI profiling format

#8 dkoslicki opened 4 years ago
0
Convert 16S output format to BIOM

#7 dkoslicki opened 4 years ago
5
Add code to make WGS sensing matrix

#6 dkoslicki opened 4 years ago
0
Add code to form y vector for WGS data

#5 dkoslicki opened 4 years ago
0
Add code to form y vector for 16S data

#4 dkoslicki closed 4 years ago
0
Add code to make 16S sensing matrix

#3 dkoslicki closed 4 years ago
0
Benchmark speed

#2 dkoslicki closed 4 years ago
3
Simplify MinDivLP Code

#1 dkoslicki opened 4 years ago
0