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KoslickiLab
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YACHT
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
28
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7
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Addition of new download scripts and improved .gitignore file
#73
druvus
closed
9 months ago
1
Replace branchwater developer mode with its latest conda version
#72
chunyuma
closed
9 months ago
1
running yacht on docker with "act"
#71
mfl15
closed
9 months ago
3
Preparing YACHT for Bioconda Packaging
#70
druvus
closed
9 months ago
3
Bug yac 13 2
#69
bioinfwithjudith
closed
9 months ago
1
Preparing YACHT for Bioconda Packaging: Enhancements and Refactoring Efforts
#68
druvus
closed
9 months ago
1
Training doesn't like sig files
#67
dkoslicki
opened
9 months ago
8
Update column_descriptions.csv
#66
dkoslicki
closed
9 months ago
2
Lint
#65
mlupei
closed
7 months ago
4
Bug yac 13 - unsure if it is appropriate to use a condition in this case
#64
bioinfwithjudith
closed
9 months ago
3
Update README.md
#63
mfl15
closed
9 months ago
2
test errors due to directory changes
#62
mohsenht
closed
9 months ago
1
add the pre-train database info into README.md
#61
chunyuma
closed
9 months ago
2
Bioconda release
#60
mohsenht
closed
9 months ago
12
Adding tests for standardizing output
#59
mahmudhera
closed
9 months ago
3
Adding tests for standardize output
#58
mahmudhera
closed
10 months ago
1
Adding tests
#57
mahmudhera
closed
10 months ago
2
Improving coverage, removing code smells
#56
mahmudhera
closed
10 months ago
1
added a few tests
#55
mahmudhera
closed
10 months ago
2
Adding unittests PR
#54
mahmudhera
closed
10 months ago
1
calculate p-value considering coverage
#53
chunyuma
closed
9 months ago
5
Badges
#52
mlupei
closed
10 months ago
3
Codecov
#51
mlupei
closed
10 months ago
3
Shaopeng
#50
ShaopengLiu1
closed
10 months ago
1
Add a warning to users that training step on the entire GTDB will take significant amount of time
#49
kodh49
closed
10 months ago
3
fixed a bug reported at issue #47
#48
chunyuma
closed
10 months ago
1
Setup file still says there was a problem
#47
dkoslicki
closed
10 months ago
1
Create LICENSE.txt
#46
dkoslicki
closed
10 months ago
1
Update removing corr genomes
#45
chunyuma
closed
10 months ago
1
Add test to look for `abspath` error
#44
dkoslicki
closed
6 months ago
0
Update removing corr genomes
#43
chunyuma
closed
10 months ago
2
YAC-29-codeconv
#42
mfl15
closed
10 months ago
1
Fixing issues
#41
dkoslicki
closed
10 months ago
2
Add demo workflow to the tests
#40
dkoslicki
closed
10 months ago
0
Check if a sig.zip file has a manifest in it
#39
dkoslicki
closed
10 months ago
0
Remove extraneous --dirname and --filename
#38
dkoslicki
closed
10 months ago
0
add --force flag for overwriting existing training data
#37
dkoslicki
closed
10 months ago
0
Uncaught runtime error
#36
dkoslicki
closed
10 months ago
2
Fix tests for new training method
#35
dkoslicki
closed
10 months ago
0
Make test and runtime check for only single sketch in .zip file for the sample
#34
dkoslicki
closed
10 months ago
0
Use case examples
#33
mfl15
opened
10 months ago
6
CAMI output format issue
#32
dkoslicki
closed
10 months ago
2
Relative import error in conversion script
#31
dkoslicki
closed
10 months ago
0
install issue
#30
dkoslicki
closed
10 months ago
8
Shaopeng
#29
ShaopengLiu1
closed
10 months ago
0
SonarQube build
#28
mfl15
closed
10 months ago
1
YAC - 46, Adding tests
#27
mfl15
closed
10 months ago
1
Issue21 sourmash version
#26
chunyuma
closed
10 months ago
5
add docstring for testing - code documentation
#25
raquellewei
closed
6 months ago
2
Updating unit tests, adding to pipeline
#24
mfl15
closed
11 months ago
0
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