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KoslickiLab
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YACHT
A mathematically characterized hypothesis test for organism presence/absence in a metagenome
MIT License
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Issue21 sourmash version
#26
chunyuma
closed
1 year ago
5
add docstring for testing - code documentation
#25
raquellewei
closed
8 months ago
2
Updating unit tests, adding to pipeline
#24
mfl15
closed
1 year ago
0
Issue13
#23
chunyuma
closed
1 year ago
2
fix a potential bug
#22
chunyuma
closed
1 year ago
1
Optimize the code to reduce RAM usage
#21
chunyuma
closed
1 year ago
1
Fix issue #19 by adding the paths of all files generated from the training step to json file
#20
chunyuma
closed
1 year ago
0
run_YACHT.py: error: the following arguments are required: --database_prefix, --outdir
#19
mfl15
closed
1 year ago
0
Set up CI. Part 1. Running the code on GitHub Actions.
#18
mfl15
closed
1 year ago
0
Fixes YAC35,37,39
#17
dkoslicki
closed
1 year ago
0
Update README.md, YAC-2-improve-installation-process-readme
#16
mfl15
closed
1 year ago
0
Uncaught error
#15
dkoslicki
closed
1 year ago
2
tqdm not in requirements
#14
dkoslicki
closed
1 year ago
1
Output format needs attention
#13
dkoslicki
closed
1 year ago
3
Training step throws an error with empty/small sketches, should report reason and make a suggestion to fix
#12
Electrocyte
closed
8 months ago
2
Move to dataframes instead of tons of numpy array
#11
dkoslicki
closed
1 year ago
0
Use exact instead of approximate Binomail CDF calculation
#10
dkoslicki
closed
1 year ago
0
refactor recover_abundance.py
#9
dkoslicki
closed
1 year ago
0
Investigate C/Rust implementation
#8
dkoslicki
closed
9 months ago
1
standardize output format
#7
dkoslicki
closed
1 year ago
2
Provide use-case examples
#6
dkoslicki
opened
1 year ago
0
Need test suites
#5
dkoslicki
closed
1 year ago
0
Refactor to make workflow clearer
#4
dkoslicki
closed
1 year ago
0
Create a release for YACHT
#1
gregorysprenger
closed
11 months ago
2
Expand readme, clarify inputs, etc. (Enhancement)
#2
gregorysprenger
closed
11 months ago
2
Dependencies, requirements.txt, and conda (Enhancement)
#3
gregorysprenger
closed
1 year ago
1
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