Closed yxiao832 closed 5 years ago
Hi MAGIC team,
I found this package is really nice! Thank you for developing this package!
I am trying to generate some data of predicted targets of a TF similar like Fig.6 in your cell paper. I am not very sure about the command I should use. It seems kNN-DREMI is the way to go. Here is the link I found https://scprep.readthedocs.io/en/stable/_modules/scprep/stats.html#knnDREMI
But after reading the tutorial, it seems it is good for two genes(for Fig.5c/d). I am not sure whether this script I found can use it for global prediction.
Thank you! Yang
Hi MAGIC team,
I found this package is really nice! Thank you for developing this package!
I am trying to generate some data of predicted targets of a TF similar like Fig.6 in your cell paper. I am not very sure about the command I should use. It seems kNN-DREMI is the way to go. Here is the link I found https://scprep.readthedocs.io/en/stable/_modules/scprep/stats.html#knnDREMI
But after reading the tutorial, it seems it is good for two genes(for Fig.5c/d). I am not sure whether this script I found can use it for global prediction.
Thank you! Yang