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KrishnaswamyLab / MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
GNU General Public License v2.0
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Gene name error in the tutorial #51

Closed YubinXie closed 7 years ago

YubinXie commented 7 years ago

In the tutorial (http://nbviewer.jupyter.org/github/pkathail/magic/blob/develop/notebooks/Magic_single_cell_RNAseq.ipynb), it says:

2D scatter plot after MAGIC: In [6]:fig, ax = scdata.magic.scatter_gene_expression(['VIM', 'CDH1'], color ='ZEB1')

However, the gene name after MAGIC is like: "MAGIC VIM"," MAGIC CDH1". So when I ran the above codes it showed "no such genes". It will be great if you can correct this in the tutorial.

pkathail commented 7 years ago

Thanks for pointing this out, will update the tutorial!

pkathail commented 7 years ago

Fixed