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KrishnaswamyLab
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PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
http://phate.readthedocs.io
GNU General Public License v2.0
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Regarding initialization in PHATE
#146
JayaniLakshika
opened
1 week ago
0
What is happening in mds.method = "classic"?
#145
JayaniLakshika
opened
1 week ago
0
Update LICENSE to Yale Ventures Non-Commercial License
#144
dbhaskar92
opened
3 weeks ago
0
Providing init to the phateR implementation only saves up time if only the parameter t is changing but not other parameters?
#143
erzakiev
opened
5 months ago
1
Intrinsic dimension of PHATE embedding identifes branches
#142
YYT1002
opened
5 months ago
0
Support more graphs for phate.fit
#141
dsm-72
opened
9 months ago
0
Error: TypeError: __init__() got an unexpected keyword argument 'k'
#140
handesome
opened
11 months ago
0
AttributeError: 'NoneType' object has no attribute 'split'
#139
danli349
closed
1 year ago
1
AttributeError: 'TaskLogger' object has no attribute 'log_debug'
#138
danli349
closed
1 year ago
2
Can phate support a higher version of pandas?
#137
caodudu
closed
1 year ago
1
Cannot import phate: numpy version?
#136
haoqichen20
opened
1 year ago
1
Dependencies update
#135
dsm-72
closed
1 year ago
13
destination is read-only
#134
AndrewSkelton
opened
1 year ago
0
Application of PHATE to Visium 10x data
#133
tyaoi
opened
1 year ago
0
Dsm 72 patch 1
#132
dsm-72
opened
1 year ago
6
AttributeError: 'kNNGraph' object has no attribute '_kernel'
#131
josephineyates
closed
1 year ago
1
API Documentation not shown
#130
gjhuizing
closed
1 year ago
1
[MINOR] Fix broken ipynb nbviewer link
#129
cakiki
closed
1 year ago
1
cell type annotations of EB
#128
ShobiStassen
opened
1 year ago
0
Recommended minimum number of cells to run PHATE?
#127
kuang-da
opened
1 year ago
0
cell-cycle & mitochondrial regression
#126
kvshams
opened
1 year ago
2
Update graphtools requirement
#125
scottgigante
closed
1 year ago
1
Install issue, probably sklearn -> scikit-learn versions
#124
bbimber
closed
1 year ago
4
PHATE gives "worse results" than UMAP
#123
LaviCor
closed
10 months ago
5
PhateR - python problem
#122
LaviCor
closed
1 year ago
0
Adding cell id (input rowname) in PHATE output (Y_phate in python tutorial :EmbryoidBody)
#121
parkjooyoung99
opened
1 year ago
0
Update bioconda
#120
dsm-72
opened
1 year ago
1
Test on python 3.9 and 3.10
#119
scottgigante
closed
1 year ago
2
python 3.10
#118
jsnagai
closed
1 year ago
1
Remove deprecated kwargs
#117
scottgigante
closed
2 years ago
2
AttributeError: 'PHATE' object has no attribute 'a'
#116
dsm-72
closed
2 years ago
0
T-PHATE algorithm
#115
apathanasiadis
opened
2 years ago
0
PHATE loadings?
#114
apathanasiadis
closed
2 years ago
3
How could I optimize lineage separation ?
#113
BastiDucreux
closed
2 years ago
2
MDS smacof n_jobs argument
#112
choltz95
opened
2 years ago
1
Error instantiaiating PHATE
#111
wumirose
closed
2 years ago
4
conda install phate fails
#110
stanleyjs
closed
2 years ago
2
PHATE with non-PCA dimensionality reduction / denoised counts
#109
andrewjkwok
closed
2 years ago
4
SVD computation error message
#108
ivan-marroquin
opened
3 years ago
0
Be able to use minkowski metric with p < 1
#107
ivan-marroquin
opened
3 years ago
2
fix __repr__ errors
#106
lukebfunk
closed
2 years ago
5
RE: input data for PHATE
#105
vravik
opened
3 years ago
0
Install "scottgigante/seurat", ref="patch/add-PHATE-again" get error
#104
Roger-GOAT
closed
3 years ago
3
PHATE v1.0.7
#103
scottgigante
closed
3 years ago
1
Fix deploy script
#102
scottgigante
closed
3 years ago
1
Fix numpy.float deprecation (new from numpy 1.20)
#101
dburkhardt
closed
3 years ago
2
fix mendeley link
#100
scottgigante
closed
3 years ago
0
Reproducing Supplementary Figure 13 in paper and general re-weighting procedure
#99
jashahir
opened
3 years ago
0
Update travis test python versions
#98
dburkhardt
closed
3 years ago
0
How would this be applied to non-Biology applications?
#97
DonaldTsang
closed
4 years ago
6
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