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KujawinskiLaboratory
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Autotuner
This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
MIT License
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Errors in eicParamEstsQC, Does it mean that my data quality is not good enough to do this?
#36
YUANMENG-1
opened
2 months ago
0
Why do I get errors when I use the officially recommended code?
#35
v-v1150n
opened
4 months ago
1
eicParamEsts error (Error in findPeakWidth(approvScorePeaks = approvScorePeaks, mzDb = mzDb, : maxPw length is zero. Check how scans are being matched)
#34
Pembs
closed
1 year ago
0
eicParamEsts : maxPw length is zero. Check how scans are being matched.
#33
wushaowen1992
opened
2 years ago
7
Estimation of bw grouping parameter
#32
YasinEl
opened
3 years ago
0
returnPPMplots not working (on windows); suggest Update checkEICFunctions.R
#31
tew42
closed
3 years ago
1
Update plot_peaks.R
#30
bouranij
closed
3 years ago
1
Parsing error
#29
hh1985
closed
3 years ago
9
Issues when using Autotuner with GC-MS data
#28
FleurGaBru
closed
3 years ago
6
<0 rows> (or 0-length row.names) in metadata
#27
pshahnazari
closed
4 years ago
2
Hello,
#26
pshahnazari
closed
4 years ago
0
Intuition behind sliding window analysis
#25
crmclean
opened
4 years ago
4
Error: 'extract_peaks' is not an exported object
#24
BaylorSci
closed
4 years ago
3
Error in plot_signals
#23
pshahnazari
closed
4 years ago
11
Error in plot_signals(Autotuner, threshold, sample_index = seq_len(3), : factorCol is not within the MSest metadata.
#22
pshahnazari
closed
4 years ago
0
Learn how to update release version
#21
crmclean
closed
4 years ago
0
Update citations on readme and in package citation
#20
crmclean
closed
4 years ago
0
Can't read mzXML or mzML
#19
stolltho
closed
4 years ago
15
Selection of the sliding window parameters.
#18
hh1985
closed
4 years ago
3
Adapt for mzxml format
#17
yufree
closed
4 years ago
13
Fix travis build
#16
crmclean
closed
5 years ago
1
Issue ploting individual peaks from TIC
#15
crmclean
closed
5 years ago
1
Add unit test to code from lines 145-150 of vignette
#14
crmclean
closed
5 years ago
1
Add axis labels to TIC plot figure
#13
crmclean
closed
5 years ago
1
Error in eicParamEsts Error in if (toowide || edge) { : missing value where TRUE/FALSE needed
#12
SengaSacul
closed
5 years ago
3
no slot of name "peak_diff" for this object of class "Autotuner"
#11
crmclean
closed
5 years ago
1
Problems with the Dataset/Autotuner
#10
SengaSacul
closed
5 years ago
6
Installation mmetspData Package not found
#9
SengaSacul
closed
5 years ago
4
Improved max pw estimate to shiny
#8
crmclean
closed
5 years ago
0
Add verbose flag to GUI
#7
crmclean
closed
5 years ago
1
Fix plot_peaks legend
#6
crmclean
closed
5 years ago
0
Add verbose flag to supress messeges
#5
crmclean
closed
5 years ago
0
Check max peak width estimation after adoption of start/endScan convention.
#4
crmclean
closed
5 years ago
0
help
#3
crmclean
closed
5 years ago
0
Make plots from ppm distribution printable after.
#2
crmclean
closed
5 years ago
0
Make the gap statistic optional
#1
crmclean
closed
5 years ago
0