Kurt-Hetrick RANDOM issues

Kurt-Hetrick / RANDOM

random scripts that I either write for people or that I routinely use

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issues

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split vcf by chromosome and tarball

#23 Kurt-Hetrick closed 4 months ago
1
SELECT_SAMPLES_FROM_MS_VCF.sh: DRAGEN version. fix their VCF so it passes validations.

#22 Kurt-Hetrick closed 4 months ago
1
SELECT_SAMPLES_FROM_MS_VCF.sh: maybe replace gatk with bcftools

#21 Kurt-Hetrick closed 4 months ago
2
write a generalized demuxing pipeline (for novaseqx)

#20 Kurt-Hetrick closed 6 months ago
1
SampleSheetMakeFromCram.sh detect reference genome and make sample sheet accordingly

#19 Kurt-Hetrick opened 7 months ago
1
create cram reheader tool

#18 Kurt-Hetrick opened 11 months ago
0
SELECT_SAMPLES_FROM_MS_VCF.sh: add a lot of features.

#17 Kurt-Hetrick opened 2 years ago
1
SELECT_SAMPLES_FROM_MS_VCF.sh increase compression rate

#16 Kurt-Hetrick closed 1 year ago
1
SELECT_SAMPLES_FROM_MS_VCF.sh remove unused alternates

#15 Kurt-Hetrick closed 4 years ago
1
SampleSheetMakeFromCram.sh input from spotfire export

#14 Kurt-Hetrick opened 4 years ago
2
SELECT_SAMPLES_FROM_MS_VCF.sh add build option

#13 Kurt-Hetrick closed 1 year ago
1
update readme

#12 Kurt-Hetrick closed 1 year ago
1
DOWNSAMPLE_SAM2FASTQ.sh: small bam files

#11 Kurt-Hetrick opened 5 years ago
0
cram-bam_to_fastq_picard.sh md5sum output

#10 Kurt-Hetrick opened 5 years ago
0
cram-bam_to_fastq_picard.sh: add more features

#9 Kurt-Hetrick opened 5 years ago
0
DOWNSAMPLE_SAM2FASTQ.sh

#8 Kurt-Hetrick opened 5 years ago
1
sample sheet maker from cram for dual indexes.

#7 Kurt-Hetrick closed 5 years ago
1
argument to separate populating bed file path and output directory

#6 Kurt-Hetrick closed 5 years ago
2
create a wrapper to do cross-concordance

#5 Kurt-Hetrick opened 5 years ago
0
make mendel inheritance report

#4 Kurt-Hetrick opened 5 years ago
0
compress lgen

#3 Kurt-Hetrick closed 4 years ago
1
write something that converts dups file with local id to sm tag

#2 Kurt-Hetrick closed 6 years ago
1
sample sheet maker from cram files

#1 Kurt-Hetrick closed 6 years ago
1