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KGTuner: Efficient Hyper-parameter Search for Knowledge Graph Learning" (ACL 2022 long paper)
https://arxiv.org/pdf/2205.02460.pdf
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automl hyperparameter-optimization knowledge-graph

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KGTuner

Official code for the paper "KGTuner: Efficient Hyper-parameter Search for Knowledge Graph Learning" (ACL 2022 long paper).

Overview

KGTuner

We propose an efficient two-stage search algorithm, KGTuner, which efficiently explores HP configurations on small subgraph at the first stage and transfers the top-performed configurations for fine-tuning on the large full graph at the second stage.

Instructions

0. Setup

pip install -r requirements.txt

1. Generate sampled KG

Supported datasets: DATASET = {wn18rr/FB15k_237/ogbl-biokg/ogbl-wikikg2}.

usage:

python3 generator_random_walks.py -dataset {DATASET} -sample_ratio {FLOAT}

example:

python3 generator_random_walks.py -dataset wn18rr -sample_ratio 0.2

The generated new dataset will be store in dataset/sampled_wn18rr_0.2_starts_10.

2. Run hyper-parameter searching

Supported models: MODEL = {ComplEx/DistMult/TransE/RotatE/TuckER/RESCAL/ConvE/AutoSF}.

usage:

python3 run.py -search -earlyStop -space {SPACE} -dataset {DATASET} -cpu 2 -valid_steps {e.g., 2500} -max_steps {e.g., 100000} -model {MODEL} -eval_test -test_batch_size {e.g., 16} -gpu 0

Two-stage searching

example (firstly search on sampled_wn18rr_0.2_starts_10 and then on wn18rr):

stage1:
python3 run.py -search -earlyStop -space reduced -dataset sampled_wn18rr_0.2_starts_10 -cpu 2 -valid_steps 2500 -max_steps 20000 -model ComplEx -eval_test -test_batch_size 16 -gpu 0

stage2:
python3 run.py -search -earlyStop -space full -dataset wn18rr -pretrain_dataset sampled_wn18rr_0.2_starts_10 -cpu 2 -valid_steps 2500 -max_steps 100000 -model ComplEx -eval_test -test_batch_size 16 -gpu 0

One-stage searching

Alternatively, you can proceed searching directly on the original KG.

example:

python3 run.py -search -earlyStop -space full -dataset wn18rr -cpu 2 -valid_steps 2500 -max_steps 100000 -model ComplEx -eval_test -test_batch_size 16 -gpu 0

3. Show searched results

You can use the showResults.py to check your local HPO trials.

usage:

python3 showResults.py -dataset {DATASET} -model {MODEL}

example:

python3 showResults.py -dataset wn18rr -model ComplEx

Results

WN18RR

Model Test MRR Test Hit@1 Test Hit@3 Test Hit@10
ComplEx 0.484 0.440 0.506 0.562
DistMult 0.453 0.407 0.468 0.548
RESCAL 0.479 0.436 0.496 0.557
ConvE 0.437 0.399 0.449 0.515
TransE 0.233 0.032 0.399 0.542
RotatE 0.480 0.427 0.501 0.582
TuckER 0.480 0.437 0.500 0.557

FB15k-237

Model Test MRR Test Hit@1 Test Hit@3 Test Hit@10
ComplEx 0.352 0.263 0.387 0.530
DistMult 0.345 0.254 0.377 0.527
RESCAL 0.357 0.268 0.390 0.535
ConvE 0.335 0.242 0.368 0.523
TransE 0.327 0.228 0.369 0.522
RotatE 0.338 0.243 0.373 0.527
TuckER 0.347 0.255 0.382 0.534

ogbl-biokg

Model Test MRR Val MRR #parameters
ComplEx 0.8385±0.0009 0.8394±0.0007 187,648,000
DistMult 0.8241±0.0008 0.8245±0.0009 93,824,000
RotatE 0.8013±0.0015 0.8024±0.0012 187,597,000
TransE 0.7781±0.0009 0.7787±0.0008 187,648,000
AutoSF 0.8354±0.0013 0.8361±0.0012 187,648,000

ogbl-wikikg2

Model Test MRR Val MRR #parameters
ComplEx 0.4942±0.0017 0.5099±0.0023 250,113,900
DistMult 0.4837±0.0078 0.5004±0.0075 250,113,900
RotatE 0.2948±0.0026 0.2650±0.0034 250,087,150
TransE 0.4739±0.0021 0.4932±0.0013 250,113,900
AutoSF 0.5222±0.0021 0.5397±0.0023 250,113,900

Reproduction

Detailed commands can be found in code/scripts/reproduce.sh.

Citation

If you find this repository useful in your research, please kindly cite our paper.

@inproceedings{zhang2022kgtuner,
  title={Efficient Hyper-parameter Search for Knowledge Graph Embedding},
  author={Zhang, Yongqi and Zhou, Zhanke and Yao, Quanming and Li, Yong},
  booktitle={ACL (long paper)},
  pages={2715--2735},
  year={2022}
}