Consolidate bwa and .fai indexes in reference workflow

LCR-BCCRC / lcr-modules

Collection of standard analytical pipelines for genomic and transcriptomic data

https://lcr-modules.rtfd.io

MIT License

15 stars 7 forks source link

Consolidate bwa and .fai indexes in reference workflow #102

Open lkhilton opened 4 years ago

lkhilton commented 4 years ago

I have a tool that depends on having both bwa and .fai indexes for the reference genome in the same directory, so the first rule I had to write was one that symlinked the files together. In future versions of the reference file workflow I think it would be good to place the different index types together in one directory per genome build.

Kdreval commented 3 months ago

@lkhilton this is probably addressed by now? Or is something still missing?