lcr-modules: Standardizing genomic analyses

This project aims to become a collection of standard analytical modules for genomic and transcriptomic data. Too often do we copy-paste from each other’s pipelines, which has several pitfalls. Fortunately, all of these problems can be solved with standardized analytical modules, and the benefits are many.

Documentation: https://lcr-modules.readthedocs.io/

License: LICENSE

Installing compatible Snakemake and Oncopipe

Run the following command using conda or mamba to create the opv12 environment.

conda env create -f demo/env.yaml

Always activate this environment before running any pipelines that use LCR-modules.

conda activate opv12

Modules