expression based on a DESeq2 vst expression matrix
The option to use these can be added to the R script, with a parameter in the yaml to specify which ones to use. These files will be static parts of the lcr-module. If future covariates are used, they can be added later.
The module is currently written to only take in ONE covariate bed file. Users have been using more than one, for example
The option to use these can be added to the R script, with a parameter in the yaml to specify which ones to use. These files will be static parts of the lcr-module. If future covariates are used, they can be added later.