Add `--vanilla` arg to all `Rscript` commands

LCR-BCCRC / lcr-modules

Collection of standard analytical pipelines for genomic and transcriptomic data

https://lcr-modules.rtfd.io

MIT License

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Add `--vanilla` arg to all `Rscript` commands #314

Closed lkhilton closed 5 months ago

lkhilton commented 5 months ago

This PR adds the --vanilla argument to all Rscript commands found throughout lcr-modules snakefiles. This will improve reproducibility and ensure that the correct Conda-installed R packages are always used.