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LUMC
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HAMLET
RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department
MIT License
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Hamlet crashes when generating large size pdf report
#36
XLIU-hub
opened
2 days ago
0
In rare cases, HAMLET can incorrectly remove variants
#35
Redmar-van-den-Berg
closed
1 week ago
1
Variants without HGVS description
#34
Redmar-van-den-Berg
opened
2 months ago
0
Add gene coverage to MultiQC report
#33
Redmar-van-den-Berg
opened
2 months ago
0
Update CHANGELOG
#32
XLIU-hub
closed
4 months ago
0
Revert local access
#31
XLIU-hub
closed
4 months ago
0
Error: not enough memory for BAM sorting
#30
XLIU-hub
closed
2 months ago
4
Add support for STAR counts
#29
jeppeseverens
closed
1 year ago
0
reference files not available
#28
tilschaef
closed
1 year ago
1
HAMLET crashes on sample names with spaces
#27
Redmar-van-den-Berg
closed
1 month ago
1
HAMLET crashes on input files with spaces
#26
Redmar-van-den-Berg
closed
1 year ago
1
Fusion output
#25
Redmar-van-den-Berg
closed
2 years ago
0
Add module interface
#24
Redmar-van-den-Berg
closed
2 years ago
0
Add linting
#23
Redmar-van-den-Berg
closed
2 years ago
0
Reformat and add linting
#22
Redmar-van-den-Berg
closed
2 years ago
0
Pep
#21
Redmar-van-den-Berg
closed
2 years ago
0
Unable to download reference files
#20
jinyancool
closed
2 years ago
1
GitHub ci
#19
Redmar-van-den-Berg
closed
2 years ago
0
Errors - pytest functional
#18
Luna0308
closed
2 years ago
5
Python file not found error
#17
jeppeseverens
closed
3 years ago
1
rose-dt
#16
ZunsongHu
closed
3 years ago
1
pytest functional failing
#15
rschauner
closed
3 years ago
1
Fix #12 - SingularityCE version not recognised
#14
Redmar-van-den-Berg
closed
3 years ago
0
Enable testing via github workflows
#13
Redmar-van-den-Berg
closed
3 years ago
0
Problem detecting Singularity
#12
rschauner
closed
3 years ago
3
ERROR : 'samples'
#11
elinashe
closed
3 years ago
1
Unable to download reference files
#10
pcroucher
closed
3 years ago
1
Test Errors
#9
yanlina0205
closed
3 years ago
13
Single-end data
#8
mathieuq
closed
3 years ago
1
Various runtime errors / Installation guidance
#7
pjewell-biociphers
closed
4 years ago
3
required tool 'rose-dt' seems to be only in a private repository
#6
pjewell-biociphers
closed
4 years ago
3
Setting up config files
#5
mathieuq
closed
3 years ago
1
star-fusion setup
#4
mathieuq
closed
3 years ago
1
ERROR: Can't detect input format
#3
moniekvanselst
closed
3 years ago
4
Error: Invalid value: Unexpected column names
#2
moniekvanselst
closed
3 years ago
6
snakemake version
#1
moniekvanselst
closed
4 years ago
1