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Lafond-LapalmeJ
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MCSC_Decontamination
Scripts and documentations on the MCSC decontamination method
GNU General Public License v3.0
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Duplicate sequences in the _decont.fasta
#32
sivasubramanics
opened
1 year ago
1
error running the MCSC algorithm and no output *cluster_*.fasta
#31
Liyong-Zhang
closed
1 year ago
3
Test DIAMOND database was built with older version of DIAMOND(v0.8.x)
#30
kdews
closed
1 year ago
1
Please check for correct path of taxonomy list
#29
dtabb73
closed
1 year ago
0
Dissecting taxo_uniq.txt file
#28
dtabb73
opened
3 years ago
1
run error
#27
AlsoATraveler
closed
1 year ago
1
Use of uninitialized value in substr at get_taxa_from_diamond.pl line 96 (#1)
#26
desmondramirez
closed
6 years ago
1
Few corrections for use on a cluster.
#25
pbordron
closed
1 year ago
0
Now using options and can use blast on nt
#24
duceppemo
closed
1 year ago
0
major update to cluster_eval.pl
#23
duceppemo
closed
1 year ago
0
print 10 top hits
#22
duceppemo
closed
1 year ago
0
fixed the sort
#21
duceppemo
closed
1 year ago
0
Changed temporary file name
#20
duceppemo
closed
1 year ago
0
Update MCSC_decontamination.sh
#19
duceppemo
closed
1 year ago
0
Update README.md
#18
duceppemo
closed
1 year ago
0
Update clusters_evaluation.R
#17
duceppemo
closed
1 year ago
0
Update cluster_eval.pl
#16
duceppemo
closed
7 years ago
0
removed -t from diamond command
#15
duceppemo
closed
7 years ago
0
check for presence of diamond output
#14
duceppemo
closed
7 years ago
0
About Plantea kingdom
#13
wyim-pgl
closed
7 years ago
5
Fixed decontaminated file creation
#12
duceppemo
closed
8 years ago
0
Syntax improvement
#11
duceppemo
closed
8 years ago
0
Database/query compability check
#10
duceppemo
closed
8 years ago
0
Update README.md
#9
duceppemo
closed
8 years ago
0
sh -> bash
#8
duceppemo
closed
8 years ago
0
sh -> bash
#7
duceppemo
closed
8 years ago
0
fixed diamond makedb command line
#6
duceppemo
closed
8 years ago
0
Input file check + fastq support
#5
duceppemo
closed
8 years ago
0
Delete pathToTaxoDump.txt
#4
duceppemo
closed
8 years ago
0
Update README.md
#3
duceppemo
closed
8 years ago
0
Update MCSC_decontamination.sh
#2
duceppemo
closed
8 years ago
0
Update example.ini
#1
duceppemo
closed
8 years ago
0