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LebeerLab
/
tidytacos
Functions to manipulate and visualize microbial community data
https://lebeerlab.github.io/tidytacos/
GNU General Public License v3.0
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Stage for release 1.0.2
#58
TheOafidian
closed
5 days ago
0
more changes in names and functions?
#57
slambrechts
opened
1 week ago
3
tidytacos::add_alpha() changed?
#56
slambrechts
closed
1 week ago
2
Add unifrac as possible distance metric for ord calculation
#55
TheOafidian
closed
1 week ago
0
Add unit tests for core funcs
#54
TheOafidian
closed
3 weeks ago
0
missing unit tests for some functions
#53
kelly-sovacool
closed
3 weeks ago
0
docs need instructions for users to import their own raw data
#52
kelly-sovacool
closed
3 weeks ago
0
docs style: referring to function names
#51
kelly-sovacool
closed
2 weeks ago
0
recommend adding example data files for documentation
#50
kelly-sovacool
closed
3 weeks ago
1
community guidelines missing from README
#49
kelly-sovacool
closed
1 week ago
1
[BUG] version in DESCRIPTION is out of sync
#48
kelly-sovacool
closed
3 weeks ago
0
[BUG] R CMD Check failing on local clone of master branch
#47
kelly-sovacool
opened
1 month ago
0
[BUG] minor warnings during R CMD build
#46
kelly-sovacool
closed
3 weeks ago
0
Add examples of core functionalities
#45
TheOafidian
closed
1 month ago
0
Expand documentation
#44
TheOafidian
closed
1 month ago
0
Patch 3: documentation create_tidytacos and tacoplot_ord
#43
TheOafidian
closed
1 month ago
0
Add all function arguments to documentation pages
#42
TheOafidian
closed
1 month ago
0
Fix/document args
#41
TheOafidian
closed
1 month ago
0
Rank name detection and empty sample checks
#40
TheOafidian
closed
1 month ago
0
Feature/set rank names
#39
TheOafidian
closed
1 month ago
0
tacoplot_alphas: samples with missing alpha diversity values removed only at plotting stage
#38
david-barnett
closed
1 month ago
0
[BUG] rank_names function unexpected behaviour
#37
david-barnett
closed
1 month ago
2
[BUG] create_tidytacos example problems
#36
david-barnett
closed
1 month ago
1
several function arguments not documented - and rcmdcheck warnings ignored
#35
david-barnett
closed
1 month ago
0
[BUG] tacoplot_ord silently ignores colouring by sample or sample_id
#34
david-barnett
closed
1 month ago
0
[BUG] tacoplot_ord x argument requests string, but does the wrong thing with a string
#33
david-barnett
closed
1 month ago
0
No examples for the filter/mutate/select functions
#32
david-barnett
closed
1 week ago
1
Solve bugs in tacoplot_stack and read_tidytacos
#31
TheOafidian
closed
1 month ago
0
tacoplot_stack pie = TRUE suggestions
#30
david-barnett
closed
1 month ago
0
[BUG] tacoplot_stack x argument doesn't accept string
#29
david-barnett
closed
1 month ago
0
[BUG] read_tidytacos error handling broken
#28
david-barnett
closed
1 month ago
0
at least one of the taxonomic rank names should be present in the taxon table [BUG]
#27
slambrechts
closed
3 months ago
3
add first revisions
#26
wsmets
closed
3 months ago
0
Dev
#25
TheOafidian
closed
3 months ago
0
Add unifrac distance metric
#24
TheOafidian
closed
1 week ago
0
Add bootstrap, pvalues and fdr to networking
#23
TheOafidian
closed
4 months ago
0
Add permanova test to possible pcoa annotations
#22
TheOafidian
closed
5 months ago
0
Additional diversity metrics
#21
TheOafidian
closed
5 months ago
0
Aggregate taxonomy on trimming
#20
TheOafidian
closed
5 months ago
0
[BUG] Sample clustering fails when "sample_name" columns exists
#19
SWittouck
closed
6 months ago
1
Add different alpha diversity metrics and a plotting function
#18
TheOafidian
closed
7 months ago
0
Add Mantel test, anosim and interactive option for venndiagram
#17
TheOafidian
closed
9 months ago
0
expanding on taxonlist_per_condition
#16
wsmets
closed
9 months ago
1
Add GPL3 license
#15
SWittouck
closed
9 months ago
0
Add JOSS publication
#14
TheOafidian
closed
9 months ago
0
Renaming: Adhere to naming convention
#13
TheOafidian
closed
10 months ago
0
[BUG] Aggregate after trim ASVs
#12
TheOafidian
closed
5 months ago
0
Add extra alpha div metrics
#11
TheOafidian
closed
7 months ago
0
Add bug template
#10
TheOafidian
closed
11 months ago
0
Modular ord options
#9
TheOafidian
closed
11 months ago
0
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