LieberInstitute goesHyde_mdd_rnaseq issues

LieberInstitute / goesHyde_mdd_rnaseq

Fernando Goes and Thomas Hyde MDD RNA-seq project

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issues

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run tensorQTL map_nominal using log2(rpkm+1) on all features

#20 gpertea opened 1 year ago
0
Run leafcutter based on BipSeq

#19 lahuuki opened 2 years ago
1
Switch eQTL cutoff from FDR <0.01 to FDR < 0.05

#18 lahuuki opened 2 years ago
0
Update Genotype vcf to rda process

#17 lahuuki closed 2 years ago
1
Update Genotype vcf to rda process

#16 lahuuki opened 2 years ago
0
eQTL risk SNPs interaction with cell fractions

#15 lahuuki opened 2 years ago
0
Write Sample IDs of one diagnosis to file?

#14 aseyedia closed 2 years ago
1
Unable to compute PredictDB weights for all chromosomes

#13 aseyedia closed 1 month ago
0
Compute weights row.names/colnames error

#12 aseyedia closed 2 years ago
1
Preparing inputs for computing PredictDB weights

#11 aseyedia closed 3 years ago
9
Deconvolution term exploration

#10 lahuuki opened 3 years ago
0
Use broad cell types + pan-brain reference for deconvolution

#9 lahuuki closed 3 years ago
0
Evaluate whether qSVs already capture the cell type RNA fractions

#8 lcolladotor closed 3 years ago
1
Estimate RNA fractions using Tran et al 2020 data

#7 lcolladotor closed 3 years ago
2
Create rse_gene object for 20 control samples that overlap between Experiments

#6 lahuuki closed 3 years ago
1
drop Br5697 when we merge the MDD and Bipolar samples

#5 lcolladotor closed 3 years ago
1
Adapt eQTL code from BipSeq

#4 lahuuki opened 4 years ago
1
"push button bioinformatics": `sgejobs` practice + learning about `-hold_jid`

#3 lcolladotor closed 4 years ago
0
Clean up `rse_*` files and update them

#2 lcolladotor closed 3 years ago
1
Create code for matching and subsetting a new cov_rse degradation data.

#1 lcolladotor closed 4 years ago
2