issues
search
LinguaPhylo
/
LPhyBeast
Convert LPhy scripts to BEAST 2 XML
GNU Lesser General Public License v2.1
3
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
IsLabelledNewick="true" or "false" ?
#172
walterxie
opened
6 days ago
3
Add CMD option to generate a specified group of tree operators
#171
walterxie
opened
1 week ago
1
Cast Value class to get Generator
#170
walterxie
closed
1 week ago
0
set upper boundary manually for RealParameter for now
#169
EvaLiyt
opened
1 week ago
0
add calibrations to CalibratedYuleToBeast
#168
EvaLiyt
opened
3 weeks ago
0
Should not create new Taxon in LPhyBeast
#167
walterxie
opened
3 weeks ago
1
treelikelihood should set useAmbuguities=true as default
#166
walterxie
closed
1 month ago
0
BactrianRandomWalkOperator should use "windowSize"
#165
walterxie
opened
1 month ago
0
XML is incorrect if data clamping not in the sink of graphical model
#164
zjzxiaohei
opened
1 month ago
1
summary function affects likelihood XML
#163
walterxie
opened
1 month ago
0
More controls in Logger and Loggable
#161
walterxie
closed
1 month ago
0
sync from master
#160
walterxie
closed
1 month ago
0
Prepare release 1.2.1
#159
walterxie
opened
1 month ago
0
Will removing the E = rmTaxa(names=1:3, alignment=D); from jcCoalescent.lphy has any further effect on generated XML and future analysis?
#158
CSTE7007
closed
1 month ago
2
Update README.md with updated command and hyperlink
#157
CSTE7007
closed
1 month ago
1
Operator for supporting negative values
#156
walterxie
closed
1 month ago
6
Prepare release 1.2.0
#155
walterxie
closed
1 month ago
0
correct release path #140
#154
walterxie
closed
2 months ago
0
add ORC
#153
walterxie
closed
2 months ago
0
Extension loading issue while running LPhyBEAST 1.1.0 via cmd
#152
CSTE7007
closed
1 month ago
4
replace FastRelaxedClockLogNormal to ORC
#151
walterxie
closed
1 month ago
4
update b2.7ops branch
#150
walterxie
closed
2 months ago
0
add BICSSPS ops #128
#149
walterxie
closed
2 months ago
0
Update BEAST dependencies
#148
walterxie
closed
2 months ago
0
Merge LPhyBeast-Ext to this repo
#147
walterxie
closed
3 months ago
0
Local clock to beast #145
#146
walterxie
closed
3 months ago
0
LocalClockToBeast dependency setting
#145
EvaLiyt
closed
3 months ago
0
implement CalibratedYuleToBeast
#144
EvaLiyt
opened
4 months ago
0
Maven
#143
walterxie
closed
4 months ago
0
updates from master branch
#142
walterxie
closed
4 months ago
0
Change to setup IntelliJ manually
#141
walterxie
closed
5 months ago
0
Change to setup IntelliJ as Maven project
#140
walterxie
closed
3 months ago
0
Add UpDownOperator to PopulationFunction
#139
yxu927
closed
7 months ago
2
Refactor LPhyBeastConfig
#138
walterxie
opened
7 months ago
0
Model misspecification test
#137
walterxie
closed
2 months ago
3
use getExcludedGenerator first
#136
walterxie
closed
7 months ago
0
It should exclude Value's type not the Value itself
#135
walterxie
closed
7 months ago
0
Starting value and tree problems for ASM package
#134
walterxie
opened
9 months ago
0
use getAsRealParameter not getBEASTObject
#133
walterxie
opened
9 months ago
0
Release 1.1.0
#132
walterxie
closed
10 months ago
0
Vectorised Alignments not link to the correct index in tree likelihood
#131
walterxie
closed
10 months ago
3
Migrate to lphy1.5 and beast2.7.6
#130
walterxie
closed
10 months ago
1
Lphy1.5
#129
walterxie
closed
10 months ago
0
Migrate to BEAST 2.7 operators
#128
walterxie
opened
10 months ago
2
release 1.0.5
#127
walterxie
closed
12 months ago
0
null Exception when not using Macro
#126
walterxie
closed
12 months ago
0
Recognise LPhy Macro in LPhyBEAST
#125
walterxie
closed
11 months ago
3
change constants in command line arguments
#124
walterxie
closed
1 year ago
4
Github action has a problem again and again ...
#123
walterxie
opened
1 year ago
0
WilsonBalding and WideExchange should be more like size^0.2
#122
walterxie
closed
1 year ago
1
Next