LPhyBeast
LPhyBEAST is a command-line program that takes a LPhy script file including model specification and data block, and produces a BEAST 2 XML file. It therefore enables LPhy as an alternative way to succinctly express and communicate BEAST2 analyses.
Setup and usage
LPhyBEAST is implemented as an application in the BEAST 2 package "lphybeast". The installation guide and usage instructions are available in the User Manual.
Tutorials
LPhy and LPhyBEAST Tutorials
Dependencies
BEAST 2 packages, for example:
The details are in version.xml. All released BEAST 2 packages are listed in Package Viewer.
BEASTLabs beast.util.Script depends on jdk.nashorn.api.scripting.ScriptObjectMirror.
If there is NoClassDefFoundError for it, you can add "-Xbootclasspath/a:${nashorn_path}" to your javac,
where ${nashorn_path}=/my/path/to/libext/nashorn.jar.
LPhyBeastExt
More in another BEAST 2 package to host LPhyBeast extensions.