LinkageIO Camoco issues

LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

MIT License

41 stars 32 forks source link

issues

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Store parent SNP in Overlap analysis

#52 schae234 opened 7 years ago
0
Moved coex table to Blaze

#51 monprin closed 7 years ago
1
Moved coex table to Blaze

#50 monprin closed 7 years ago
0
Implement a GWAS enrichement based on SNP to gene mapping

#49 schae234 opened 7 years ago
0
Replaced feather with bcolz (Fixed)

#48 monprin closed 7 years ago
2
Replaced feather with bcolz

#47 monprin closed 7 years ago
0
Allow getting multiple GOTerms at Once

#46 monprin opened 7 years ago
4
min_single_sample_expr Filter

#45 orionzhou closed 7 years ago
3
using the del_dataset command does not remove MCL clusters

#44 schae234 closed 5 years ago
1
Update on feather?

#43 schae234 closed 7 years ago
3
Segmentation fault when building large networks

#42 MeeshCompBio closed 8 years ago
9
One tail vs two tailed GO term

#41 MeeshCompBio closed 7 years ago
3
Expand options for building GOnts

#40 schae234 closed 5 years ago
0
Cluster accessions in COB plot

#39 schae234 closed 8 years ago
1
Retrieve all ontology terms associated with loci

#38 monprin closed 7 years ago
2
rowid doesn't get reset when RefGen gets rebuilt

#37 schae234 closed 8 years ago
1
Bug fixed subnetwork, coex_expr_index, and neighbors

#36 monprin closed 8 years ago
0
Fixed a couple bugs I found in subnetwork and neighbors

#35 monprin closed 8 years ago
0
Brought mem requirement for most thing under 16GB, dropped HDF5 in favor of Feather

#34 monprin closed 8 years ago
0
Fixed plot label issue

#33 MeeshCompBio closed 8 years ago
0
Install script fix

#32 MeeshCompBio closed 8 years ago
0
Num Intervening does not always produce result

#31 monprin opened 8 years ago
3
new cli command for gene neighbors

#30 MeeshCompBio closed 8 years ago
0
Implement a better MCL interface in python

#29 schae234 closed 6 years ago
1
GWAS GO-Simulations non constant candidates

#28 schae234 opened 8 years ago
0
gene neighbors

#27 MeeshCompBio closed 8 years ago
1
creating COB from .csv

#26 MeeshCompBio closed 8 years ago
3
cli camoco health error

#25 MeeshCompBio closed 8 years ago
29
Import Datasets Code

#24 schae234 closed 8 years ago
1
Changing filtering parameters when building COB

#23 MeeshCompBio closed 8 years ago
5
Micro Array Test COB

#22 schae234 closed 8 years ago
1
Made GO ontology, sped up base ontology, added aliases to refgen, fixed bug with config.

#21 monprin closed 9 years ago
1
Made GO ontology, sped up base ontology, added aliases to refgen.

#20 monprin closed 9 years ago
0
Made GO ontology, sped up base ontology, added aliases to refgen.

#19 monprin closed 9 years ago
0
To Rectify libqhull.so.5 Import Error

#18 schae234 closed 9 years ago
1
Running Git LFS in order to run tests

#17 schae234 closed 9 years ago
0
To Rectify libicui18n.so.48 Import Error

#16 monprin closed 9 years ago
1
MCL requirement

#15 schae234 closed 9 years ago
5
Fixes to Onotology for base class purposes.

#14 monprin closed 9 years ago
1
Stripped down ontology.

#13 monprin closed 9 years ago
1
Added comparison class.

#12 monprin closed 9 years ago
1
Added first draft of comparison class.

#11 monprin closed 9 years ago
2
Comparing COBS with Gene Ontology (and others)

#10 schae234 closed 9 years ago
4
Added compare_degree function and striping of quotes in gffs

#9 monprin closed 9 years ago
1
Test Suite

#8 schae234 closed 9 years ago
1
Add a Gitter chat badge to README.md

#7 gitter-badger closed 9 years ago
0
Networks from different count metrics

#6 schae234 closed 9 years ago
2
No default .camoco.conf file

#5 schae234 closed 9 years ago
1
Installation Experience

#4 monprin closed 9 years ago
0
Implemented BootstrapLocality script

#3 schae234 closed 9 years ago
0

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