Still unable to connect to splicegraph

[tujizju]

Hi! When I run SpliceSeq as mentioned on the Spliceseq website, a error(database connect error: unable to connect to splicegraph20) came out. As you've already replied in another issue, the sample SpliceSeq database wasn't setup, and would be restoring. I wonder if the setup of the database completes now?

Thanks, Hang

[mryaninsilico]

Hang,

Are you trying to analyze your own RNASeq data with SpliceSeq? If so, you need to install a local empty version of the database by following the instructions here: https://bioinformatics.mdanderson.org/public-software/spliceseq/installation/.

If you are just interested in TCGA data, you can use the download function here to get data that you want: https://bioinformatics.mdanderson.org/TCGASpliceSeq/PSIdownload.jsp

Mike

From: tujizju [mailto:notifications@github.com] Sent: Saturday, December 21, 2019 2:28 AM To: MD-Anderson-Bioinformatics/SpliceSeq Cc: Subscribed Subject: [MD-Anderson-Bioinformatics/SpliceSeq] Still unable to connect to splicegraph (#3)

Hi! When I run SpliceSeq as mentioned on the Spliceseq website, a error(database connect error: unable to connect to splicegraph20) came out. As you've already replied in another issue, the sample SpliceSeq database wasn't setup, and would be restoring. I wonder if the setup of the database completes now?

Thanks, Hang

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[ChrisWakefield]

Apparently solved since 2019.