SpliceSeq is an application that aligns RNASeq reads to models of all human genes. The analysis produces splice graphs annotated with read totals and percent-spliced-in (PSI) values for all potential splice events. SpliceSeq can perform comparative analysis between samples or groups of samples to find significant differences in splicing patterns. The results are presented in a dynamic, graphical interface that allows sorting/filtering of splice events and exploration of splicing changes and the impact on protein product.
Please see the documentation <http://bioinformatics.mdanderson.org/main/SpliceSeq:Overview>_ on the MD Anderson BCB website for instructions on installing and running SpliceSeq.