pango-watch

Watch for updates in pango-designation!

Pango lineages interactive tree

Pango lineages interactive graph

Changes

Note: Links to lineages on https://cov-lineages.org will not work until the site is updated to include the changes.

2024-09-06

• + LZ.2.1 Alias of B.1.1.529.2.86.1.1.18.2.2.1, ORF10:Q29*
• + MZ.1 Alias of B.1.1.529.2.86.1.1.67.1.1, S:S31F
• + XDV.1.7.1 S:T22N, S:V62F
• + XDV.1.9.1 S:A435S

2024-08-28

• + LF.9 Alias of B.1.1.529.2.86.1.1.16.1.9, S:S60P
• + LF.9.1 Alias of B.1.1.529.2.86.1.1.16.1.9.1, S:N185D

2024-08-25

• + LB.1.4.3 Alias of B.1.1.529.2.86.1.1.9.2.1.4.3, S:A845S, USA

2024-08-21

• + LU.2.2 Alias of B.1.1.529.2.86.1.1.15.1.2.2, S:Q677P, ORF1a:T1000I, Ecuador

2024-08-18

• + XDR.1.1 S:F456L, ORF1a:A2142V, ORF1b:A2480D, ORF8:E92K
• + XDR.1.2 ORF1a:L3754F, ORF1b:L1890F
• + XDV.1.7 ORF1a:D2980N, C8950T, China
• + XDV.1.8 T2551C, T9892G
• + XDV.1.9 ORF1a:T2197I
• + XDV.1.10 ORF1a:T4175I, S:G181V, China-Hubei
• + XDV.1.11 T4057C
• + XEG Recombinant lineage of JN.3.2.1, GJ.1.2, JN.3.2.1, GJ.1.2 (breakpoints: 2940-3430, 11043-12788, 28210-28957), from sars-cov-2-variants/lineage-proposals#1428

2024-08-17

• + KR.4.1 Alias of B.1.1.529.2.86.1.1.1.5.4.1, S:F456L (22928C), S:K478T, South Africa
• + LB.1.9 Alias of B.1.1.529.2.86.1.1.9.2.1.9, S:K478T (reversion), G20931T, T29194C, C15960T, India
• + KP.2.3.7 Alias of B.1.1.529.2.86.1.1.11.1.2.3.7, ORF1a:T2121A
• + MW.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.7.1, S:Q239R, ORF1a:I785V, ORF6:L16I
• + KP.2.22 Alias of B.1.1.529.2.86.1.1.11.1.2.22, S:S31del, ORF1a:V3718F
• + KP.2.23 Alias of B.1.1.529.2.86.1.1.11.1.2.23, S:S31del, ORF3a:A110S, ORF8:G77S
• + KP.2.24 Alias of B.1.1.529.2.86.1.1.11.1.2.24, S:S31del, C9286T, C14919T
• + KP.3.1.8 Alias of B.1.1.529.2.86.1.1.11.1.3.1.8, S:F59S, A9235G, Georgia
• + MY.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.8.1, S:P174S, ORF3a:T64I, Georgia
• + LW.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1.1, S:T33I
• + LW.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1.1, S:T22N
• + KP.3.6 Alias of B.1.1.529.2.86.1.1.11.1.3.6, S:T22N, Canada
• + KP.6 Alias of B.1.1.529.2.86.1.1.11.1.6, S:R346I
• + KS.1.4 Alias of B.1.1.529.2.86.1.1.13.1.1.4, C22414T, S:R237K
• + LF.8 Alias of B.1.1.529.2.86.1.1.16.1.8, S:M153I, C3244T, A18432T, C27110T
• + LF.8.1 Alias of B.1.1.529.2.86.1.1.16.1.8.1, S:S31F
• + LF.8.1.1 Alias of B.1.1.529.2.86.1.1.16.1.8.1, S:T22N
• + JN.1.16.5 Alias of B.1.1.529.2.86.1.1.16.5, S:T22N, S:Q493E
• + XEE Recombinant lineage of KP.2.3.7 and JN.1* (breakpoint 24873-25592), from #2721
• + XEF Recombinant lineage of LB.1.4 and KP.3 (breakpoint 22600-23038), from sars-cov-2-variants/lineage-proposals#1855

2024-08-16

• + JN.1.4.9 Alias of B.1.1.529.2.86.1.1.4.9, S:F456L, on branch with JN.1.4.2/5/6 (T18453C), from #2577
• + LB.1.4.2 Alias of B.1.1.529.2.86.1.1.9.2.1.4.2, S:A879S, ORF1a:E472D, USA
• + MU.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.5.1, S:T572I, ORF1a:P4339T, ORF1b:T1902I
• + KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:T22N, S:S31F, S:G184V, from sars-cov-2-variants/lineage-proposals#1578
• + KP.2.19 Alias of B.1.1.529.2.86.1.1.11.1.2.19, S:S31del, ORF1a:V28I, Guatemala, from #2720
• + KP.2.20 Alias of B.1.1.529.2.86.1.1.11.1.2.20, ORF1b:D436N, Asia
• + KP.2.20.1 Alias of B.1.1.529.2.86.1.1.11.1.2.20.1, S:T572I, S:K1266R, Australia
• + MC.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.5, S:G1219C, Spain
• + MC.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.6, ORF1a:P769S, ORF1a:G2091S
• + MC.7 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.7, S:A397V
• + MC.8 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.8, C9803T
• + MC.8.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.8.1, S:T572I
• + MC.9 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.9, ORF3a:K75N, ORF1b:A1219S
• + MC.10 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.10, C16332T
• + MC.11 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.11, C17430T
• + MC.11.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.11.1, S:S256L, Europe
• + MC.12 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.12, S:G72E
• + MC.13 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.13, C10681T
• + MC.13.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.13.1, S:S254F, USA
• + MC.14 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.14, S:T259R
• + MC.15 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.15, S:K182R
• + MC.16 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.16, G2890A
• + LF.6 Alias of B.1.1.529.2.86.1.1.16.1.6, T3172G, T17859C, Portugal/Spain, from #2589
• + LF.7 Alias of B.1.1.529.2.86.1.1.16.1.7, S:T22N, S:S31P, S:K182R, S:R190S, S:K444R, ORF9b:I5T, Senegal, from #2733
• + JN.1.38.1 Alias of B.1.1.529.2.86.1.1.38.1, S:G35S, ORF3a:G100S, USA, from #2475
• + MB.1.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1.1, ORF1a:T224I, India
• + MV.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1.1.1, S:K478T, India
• + LR.3 Alias of B.1.1.529.2.86.1.1.58.2.3, S:F456L (22930A), USA/Puerto Rico
• + JN.1.67 Alias of B.1.1.529.2.86.1.1.67, M:L46F
• + JN.1.67.1 Alias of B.1.1.529.2.86.1.1.67.1, S:F456L, China
• + XDV.1.1 S:S60P, T4579A, T9208G, China
• + XDV.1.2 S:R346T, N:I292T, ORF1a:L3116F, China
• + XDV.1.2.1 S:K462R, ORF1a:L3829F
• + XDV.1.3 S:T572I
• + XDV.1.4 S:I1114T
• + XDV.1.5 S:G184S, S:K478I, China
• + XDV.1.6 S:K478T, S:A263T, ORF1a:V1783I, ORF1a:E1209D
• + XEF Recombinant lineage of LB.1.4 and KP.3 (breakpoint 22600-23038), from #1855
• + *KP.2.14.1 Redesignated as KP.2.14: there's no good evidence for KP.2.14 lacking S:T22N in any sequences. Hence make KP.2.14.1 -> KP.2.14 and require S:T22N

2024-08-15

• + LU.2.1 Alias of B.1.1.529.2.86.1.1.15.1.2.1, S:L176F, Ecuador
• + LU.2.1.1 Alias of B.1.1.529.2.86.1.1.15.1.2.1.1, S:S60P, S:K182N, ORF1a:L204F, ORF1a:T1854I, Ecuador
• + JN.1.16.4 Alias of B.1.1.529.2.86.1.1.16.4, S:Q493E, ORF1a:G400S, ORF7a:F59K, East Asia
• + MT.1 Alias of B.1.1.529.2.86.1.1.16.4.1, S:S31P, N:P279S
• + MA.1.1 Alias of B.1.1.529.2.86.1.1.18.3.1.1, S:E780A
• + MA.1.1.1 Alias of B.1.1.529.2.86.1.1.18.3.1.1.1, S:H445P
• + JN.1.18.8 Alias of B.1.1.529.2.86.1.1.18.8, S:S31del, ORF1a:A690V, ORF1b:S2339F, France
• + KU.2.1 Alias of B.1.1.529.2.86.1.1.30.1.2.1, S:S60P, USA
• + KU.2.2 Alias of B.1.1.529.2.86.1.1.30.1.2.2, S:G213E, UK
• + MS.1 Alias of B.1.1.529.2.86.1.1.42.2.1, S:31del, ORF1a:E940G, USA/Guatemala
• + JN.1.59.1 Alias of B.1.1.529.2.86.1.1.59.1, S:S31del, S:R190S, S:R346T, ORF1a:I841V, Americas
• + XEC Recombinant lineage of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe (Germany), from #2717
• + XEC.1 S:K182R, ORF1a:L4182F, France/Ireland/Canada

2024-08-13

• + LZ.2 Alias of B.1.1.529.2.86.1.1.18.2.2, S:F456L (T22928C), ORF1a:K1226E, China

2024-08-10

• + KR.1.3 Alias of B.1.1.529.2.86.1.1.1.5.1.3, S:K304Q, S:S60P, Philippines
• + KP.2.3.6 Alias of B.1.1.529.2.86.1.1.11.1.2.3.6, S:T572I on a C28714T branch

2024-08-09

• + KR.1.3 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:K304Q, S:S60P, Philippines
• + MQ.1 Alias of B.1.1.529.2.86.1.1.7.8.1, S:T95I, S:R346T, from #2710
• + MQ.2 Alias of B.1.1.529.2.86.1.1.7.8.2, S:T678I
• + LB.1.3.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3.3, S:K182R, from #2723
• + KP.2.15.1 Alias of B.1.1.529.2.86.1.1.11.1.2.15.1, S:T572I, from #2711
• + MC.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2, S:A845S
• + MC.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2.1, S:R237K
• + MC.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.3, S:G72R, Spain
• + MC.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.4, S:S98F, Spain
• + MK.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.3, S:R346T, S:H445R
• + KP.3.1.7 Alias of B.1.1.529.2.86.1.1.11.1.3.1.7, S:L84I, from #2709
• + KP.3.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.3.4, ORF1a:I1367L, from #2707
• + MR.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.4.1, S:S31del, ORF1a:V1236I, from #2704
• + JQ.2.1.2 Alias of B.1.1.529.2.86.3.2.1.2, S:T572I, ORF1b:Q813H, Southern Africa
• + MP.1 Alias of B.1.1.529.2.86.7.1, S:N487D, Southern Africa
• + MP.1.1 Alias of B.1.1.529.2.86.7.1.1, S:R346T, S:A348P, Southern Africa
• + XED Recombinant lineage of JN.1.4 and LF.1.1.1 (breakpoint 19210-21652), from #2691

2024-08-08

• + LB.1.2.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2.2, S:T572I, C22075T
• + LB.1.2.3 Alias of B.1.1.529.2.86.1.1.9.2.1.2.3, S:F175L, ORF1a:I1568F
• + LP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.2, S:R190S, T18300A, USA
• + LP.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.4, S:T572I, ORF8:A65V
• + KP.2.3.5 Alias of B.1.1.529.2.86.1.1.11.1.2.3.5, S:K535T, A1087G
• + KP.2.3.6 Alias of B.1.1.529.2.86.1.1.11.1.2.3.6, S:T572I
• + KP.2.14.1 Alias of B.1.1.529.2.86.1.1.11.1.2.14.1, S:T22N
• + KP.2.18 Alias of B.1.1.529.2.86.1.1.11.1.2.18, S:T22N, on T22795G branch
• + XEC Recombinant lineage of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe, from #2717

2024-08-01

• + L.4 Alias of B.1.1.10.4, USA lineage

2024-07-31

• + KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1.1, S:T22N, Singapore/Taiwan/Canada, from sars-cov-2-variants/lineage-proposals#1565
• + KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.1.2, S:T678I, Russia
• + KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.1.3, S:V642A, Dominican Republic
• + MJ.1 Alias of B.1.1.529.2.86.1.1.29.1.1, S:R346T, S:S31P, ORF1a:E2070K

2024-07-26

• + JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
• + KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L, from sars-cov-2-variants/lineage-proposals#1545
• + KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A), from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (T22930A), S:H445P, ORF1a:S2083I, C850T, from sars-cov-2-variants/lineage-proposals#1521
• + JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China, from sars-cov-2-variants/lineage-proposals#1525
• + LL.1 Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA, from sars-cov-2-variants/lineage-proposals#1253
• + LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa, from sars-cov-2-variants/lineage-proposals#1089
• + LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V, from sars-cov-2-variants/lineage-proposals#1089
• + LE.1.3.1 Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V, from sars-cov-2-variants/lineage-proposals#1612
• + JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y, from sars-cov-2-variants/lineage-proposals#1374
• + LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada, from sars-cov-2-variants/lineage-proposals#1374
• + LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1089
• + LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T, from sars-cov-2-variants/lineage-proposals#1559
• + LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I, from sars-cov-2-variants/lineage-proposals#1620
• + JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L (T22928C), after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253
• + KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C, from sars-cov-2-variants/lineage-proposals#1541
• + KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502
• + LP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic, from sars-cov-2-variants/lineage-proposals#1633
• + KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I, from sars-cov-2-variants/lineage-proposals#1097
• + KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del, from sars-cov-2-variants/lineage-proposals#1459
• + KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V, from sars-cov-2-variants/lineage-proposals#1548
• + KP.2.3.4 Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T, from sars-cov-2-variants/lineage-proposals#1596
• + KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N, from sars-cov-2-variants/lineage-proposals#1524
• + KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D, from sars-cov-2-variants/lineage-proposals#1527
• + KP.2.6 Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R, S:F32del
• + KP.2.8 Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P, from sars-cov-2-variants/lineage-proposals#1546
• + KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I, from sars-cov-2-variants/lineage-proposals#1089
• + KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore, from sars-cov-2-variants/lineage-proposals#1553
• + KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England, from sars-cov-2-variants/lineage-proposals#1520
• + KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia, from sars-cov-2-variants/lineage-proposals#1550
• + KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F, from sars-cov-2-variants/lineage-proposals#1578
• + KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain, from sars-cov-2-variants/lineage-proposals#1563
• + MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I, from sars-cov-2-variants/lineage-proposals#1638
• + KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England, from sars-cov-2-variants/lineage-proposals#1614
• + KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore, from sars-cov-2-variants/lineage-proposals#1556
• + KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F, from sars-cov-2-variants/lineage-proposals#1604
• + KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P, from sars-cov-2-variants/lineage-proposals#1531
• + KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S, from sars-cov-2-variants/lineage-proposals#1651
• + KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T, from sars-cov-2-variants/lineage-proposals#1089
• + KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India from #2521
• + KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V, from sars-cov-2-variants/lineage-proposals#1611
• + KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R, from sars-cov-2-variants/lineage-proposals#1089
• + KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I, from sars-cov-2-variants/lineage-proposals#1097
• + KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
• + KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada, from sars-cov-2-variants/lineage-proposals#1565
• + JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador, from sars-cov-2-variants/lineage-proposals#1253
• + LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T, from sars-cov-2-variants/lineage-proposals#1089
• + LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C, from sars-cov-2-variants/lineage-proposals#1652
• + JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
• + LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L, from sars-cov-2-variants/lineage-proposals#1448
• + LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502
• + LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO, from sars-cov-2-variants/lineage-proposals#1558
• + LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*, from sars-cov-2-variants/lineage-proposals#1590
• + JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T, from sars-cov-2-variants/lineage-proposals#1253
• + LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1253
• + LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I, from sars-cov-2-variants/lineage-proposals#1089
• + LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654
• + LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654
• + JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G), from sars-cov-2-variants/lineage-proposals#1253
• + MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del, from sars-cov-2-variants/lineage-proposals#1635
• + JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A), from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S from #2623
• + LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P from #2623
• + JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y from #2623
• + JN.1.23.1 Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil, from sars-cov-2-variants/lineage-proposals#1552
• + JN.1.24.1 Alias of B.1.1.529.2.86.1.1.24.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
• + LM.1 Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1089
• + KW.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L (T22928C), ORF1b:R2009K, Australia/Japan, from sars-cov-2-variants/lineage-proposals#1244
• + KW.1.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia, from sars-cov-2-variants/lineage-proposals#1504
• + LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia, from sars-cov-2-variants/lineage-proposals#1504
• + JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
• + KU.2 Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.32.1 Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H, from sars-cov-2-variants/lineage-proposals#1442
• + JN.1.39.1 Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L (T22928C), C21034T, T25631C, A16011G, T6913C, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico, from sars-cov-2-variants/lineage-proposals#1318
• + JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L (T22928C), after ORF3a:A99V, on T3913A, C8092T branch from #2547
• + JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India, from sars-cov-2-variants/lineage-proposals#1089
• + MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:T22N, S:K182N, from sars-cov-2-variants/lineage-proposals#1659
• + JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L (T22930A)
• + JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:A67V, S:L249F, S:H445P, S:F456L (T22930G), Europe from #2587
• + JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) from #2560
• + JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T from #2560
• + MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) from #2560
• + MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R from #2560
• + MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I from #2560
• + MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T from #2560
• + MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa from #2560
• + JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain from #2461
• + JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain from #2461
• + MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T from #2461
• + MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L from #2461
• + JN.11.1 Alias of B.1.1.529.2.86.1.11.1, S:L455S, from sars-cov-2-variants/lineage-proposals#1303
• + JQ.2.1.1 Alias of B.1.1.529.2.86.3.2.1.1, S:F456L (T22928C), South Africa, from sars-cov-2-variants/lineage-proposals#1089
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068
• + XDK.1 S:R346T, S:G213E, G11596A, from sars-cov-2-variants/lineage-proposals#1407
• + XDK.1.1 S:K182R, S:E213G reversion, India, from sars-cov-2-variants/lineage-proposals#1490
• + XDK.1.2 S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1407
• + XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T, from sars-cov-2-variants/lineage-proposals#1385
• + XDK.3 S:F456L (T22928C), ORF1a:F3397L, from sars-cov-2-variants/lineage-proposals#1511
• + XDK.4.1 S:F456L, France/Luxembourg, from sars-cov-2-variants/lineage-proposals#1467
• + XDK.6 S:F456L, S:R237K, S:Q1201K, England, from sars-cov-2-variants/lineage-proposals#1572
• + XDP.2 S:E309Q, Brazil/Canada, from sars-cov-2-variants/lineage-proposals#1432
• + XDQ.1.1 S:S60P, C1594T, Japan, from sars-cov-2-variants/lineage-proposals#1523
• + XDQ.2 S:N487D, Vietnam, from sars-cov-2-variants/lineage-proposals#1408
• + XDQ.3 S:681H, Indonesia, from sars-cov-2-variants/lineage-proposals#1508
• + XDR.1 S:F59S, G6077T, A14031G, C26801T, Brazil/Peru, from sars-cov-2-variants/lineage-proposals#1542
• + XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America, from sars-cov-2-variants/lineage-proposals#1356
• + XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA, from sars-cov-2-variants/lineage-proposals#1290

2024-07-14

• + LB.1.4.1 Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S
• + LB.1.7.1 Alias of B.1.1.529.2.86.1.1.9.2.1.7.1, S:N148T, USA-NY
• + LB.1.7.2 Alias of B.1.1.529.2.86.1.1.9.2.1.7.2, S:S680P
• + LB.1.7.3 Alias of B.1.1.529.2.86.1.1.9.2.1.7.3, S:R34C

2024-07-13

• + MM.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.1, S:S680P, Europe
• + MM.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.2, S:G35R, S:N185D
• + KP.3.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C
• + MK.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK
• + MK.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F
• + KP.3.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3, G9424T, Japan/Canada
• + ML.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H
• + ML.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA
• + KP.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.4, ORF3a:L73F, C25521T, Asia
• + KP.3.4.1 Alias of B.1.1.529.2.86.1.1.11.1.3.4.1, S:S31F, N:A134V, ORF1a:E1192K
• + KP.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.5, S:G213E, most with C1420T, America
• + JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y
• + MN.1 Alias of B.1.1.529.2.86.1.1.18.7.1, S:D80Y, S:P174S, S:S689N, England/Wales
• + JN.1.66 Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden

2024-07-11

• + JN.1.7.9 Alias of B.1.1.529.2.86.1.1.7.9, G347A, C1057T, C7834T, S:F456L (22930A)
• + LB.1.3.2 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T
• + MH.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I
• + LB.1.8 Alias of B.1.1.529.2.86.1.1.9.2.1.8, ORF1a:I785V
• + MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I
• + KP.2.17 Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore
• + KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada
• + KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V
• + KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada
• + KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic
• + LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T
• + MJ.1 Alias of B.1.1.529.2.86.1.1.29.1.1.1, S:R346T, S:S31P, ORF1a:E2070K
• + JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V, on T3913A, C8092T branch from #2547
• + JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa
• + JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain
• + JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain
• + MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T
• + MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L

2024-07-04

• + LK.2 Alias of B.1.1.529.2.86.1.1.7.5.2, S:R346T
• + LK.2.1 Alias of B.1.1.529.2.86.1.1.7.5.2.1, S:S455A, S:T547K, Central America
• + JN.1.7.8 Alias of B.1.1.529.2.86.1.1.7.8, S:F456L (22930A), S:185-189del, N:365L, Central America
• + JN.1.50.2 Alias of B.1.1.529.2.86.1.1.50.2, ORF1a:N1540S (A4884G, T4885C)
• + ME.1 Alias of B.1.1.529.2.86.1.1.50.2.1, S:R346K

2024-07-02

• + LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T
• + LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C
• + JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G)
• + JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T
• + MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A)
• + MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R
• + MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I
• + MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T
• + MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa

2024-06-30

• + LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I
• + LP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic
• + KP.2.3.4 Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T
• + KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S
• + MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I
• + KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S
• + LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO
• + LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I
• + LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*
• + LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V
• + LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S
• + JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G)
• + MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del
• + JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S
• + LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P
• + LY.2 Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T
• + JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:F59S, S:D1260Y
• + MB.1 Alias of B.1.1.529.2.86.1.1.49.1.1, S:F456V (T22928G), S:S31F
• + MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:ST22N, S:K182N
• + XDD.3 S:T572I, S:F456L (T22928C), G12268A, T17574G, France/Europe

2024-06-18

• + LP.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.3, S:K182E, ORF1b:R276S, Singapore
• + KP.1.1.5 Alias of B.1.1.529.2.86.1.1.11.1.1.1.5, S:F59S
• + KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England
• + LW.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1, S:K182E, England
• + KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India
• + KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V
• + KP.4.1.3 Alias of B.1.1.529.2.86.1.1.11.1.4.1.3, ORF1a:M598V, A5245G, S:31del

2024-06-15

• + JN.1.1.10 Alias of B.1.1.529.2.86.1.1.1.10, C23557T, Ukraine
• + LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa
• + LE.1.3 Alias of B.1.1.529.2.86.1.1.4.7.1.3, S:L84V, ORF7a:T120I, Kenya
• + LE.1.3.1 Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V
• + JN.1.58.3 Alias of B.1.1.529.2.86.1.1.58.3, S:S31F
• + JN.1.63 Alias of B.1.1.529.2.86.1.1.63, ORF1b:K82R
• + JN.1.63.1 Alias of B.1.1.529.2.86.1.1.63.1, ORF1a:D1513E, ORF1a:A2529S, Asia
• + LV.1 Alias of B.1.1.529.2.86.6.1, ORF1b:D294N
• + LV.2 Alias of B.1.1.529.2.86.6.2, S:R346T, S:L455S, S:F456L, ORF1a:E148G, ORF1a:W630C, ORF1a:G1069R, ORF1a:G3546D, ORF1b:A520V
• + XDP Recombinant lineage of JN.1.4+T18453C and FL.15 (breakpoint between 26834 and 27809), from #2451
• + XDP.2 S:E309Q, Brazil/Canada
• + XDP.3 S:S255F, USA
• + XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America
• + XEA Recombinant lineage of JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia
• + XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA

2024-06-14

• + BA.2.86.7 Alias of B.1.1.529.2.86.7, ORF1b:Y1344H, T10819C, C28720T, South Africa

2024-06-11

• + LT.1 Alias of B.1.1.529.2.86.1.1.1.3.1, S:F456V, L176F, USA/Canada
• + JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China
• + JN.1.4.8 Alias of B.1.1.529.2.86.1.1.4.8, S:S60P, T13578C, USA，from #2625
• + LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia，from sars-cov-2-variants/lineage-proposals#1557
• + LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591
• + KP.1.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T,from sars-cov-2-variants/lineage-proposals#1593
• + KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S，
• + KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I，from sars-cov-2-variants/lineage-proposals#1589
• + KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F,from sars-cov-2-variants/lineage-proposals#1576
• + KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S,from #2627
• + JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador
• + LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T
• + LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C,from sars-cov-2-variants/lineage-proposals#1502
• + LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/lineage-proposals#1558
• + JN.1.16.3 Alias of B.1.1.529.2.86.1.1.16.3, S:T572I
• + LQ.1 Alias of B.1.1.529.2.86.1.1.18.1.1, S:F456L (22928C),from #2596
• + LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H,from #2596
• + LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414
• + JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567
• + LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I from #2567
• + LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H from #2567
• + LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189A, S:184-188del, ORF1a:E940D
• + JN.1.44.1 Alias of B.1.1.529.2.86.1.1.44.1, S:R346T, Cameroon/France,from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587
• + JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain, from #2584
• + JN.1.56 Alias of B.1.1.529.2.86.1.1.56, Orf3a:Q213K
• + JN.1.56.1 Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea from #2582
• + JN.1.57.1 Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea,from sars-cov-2-variants/lineage-proposals#1460
• + XDK.5 S:F456L, C22388T, Spain from #2611
• + *KR.2 Redesignated as LT.1 (JN.1.1.3.1) due to lack of C9142T

2024-06-10

• + KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F

2024-06-09

• + JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H

2024-06-08

• + JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A)
• + LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189P, S:184-188del, ORF1a:E940D

2024-06-06

• + LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada
• + JN.1.7.7 Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R
• + JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58.1, S:S60P
• + JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58.2, S:R346T
• + LR.1 Alias of B.1.1.529.2.86.1.1.58.2.1, S:F456L (22928C)
• + LR.2 Alias of B.1.1.529.2.86.1.1.58.2.2, S:F456V
• + JN.1.59 Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S
• + JN.1.60 Alias of B.1.1.529.2.86.1.1.60, C4543T
• + JN.1.61 Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil

2024-06-05

• + JN.1.4.8 Alias of B.1.1.529.2.86.1.1.4.7, S:S60P, T13578C, USA
• + JN.1.7.6 Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales
• + LB.1.1 Alias of B.1.1.529.2.86.1.1.9.2.1.1, S:V1104L, Canada
• + LB.1.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R
• + LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T
• + LB.1.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I
• + LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V
• + LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia
• + LB.1.6 Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada
• + LB.1.7 Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T
• + LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I
• + LP.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.2, S:S71Y, ORF1b:T2286I
• + KP.1.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T
• + KP.2.3.2 Alias of B.1.1.529.2.86.1.1.11.1.2.3.2, S:G184V
• + KP.2.3.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3.3, S:N185T
• + KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S
• + KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I
• + KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F
• + KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S
• + KP.3.2.3 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3, ORF3a:S40P, C11518T
• + KP.3.2.4 Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F
• + LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C
• + LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P
• + LQ.1 Alias of B.1.1.529.2.86.1.1.18.1.1, S:F456L (22928C)
• + LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H
• + LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China
• + LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia
• + JN.1.57 Alias of B.1.1.529.2.86.1.1.57, ORF1b:A1219S, A11947G
• + JN.1.57.1 Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea
• + JN.1.58 Alias of B.1.1.529.2.86.1.1.58, ORF1b:K2557R
• + JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58, S:S60P
• + JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58, S:R346T
• + LR.1 Alias of B.1.1.529.2.86.1.1.58.1, S:F456L (22928C)
• + LR.2 Alias of B.1.1.529.2.86.1.1.58.2, S:F456V
• + XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559

2024-06-01

• + JN.1.44.1 Alias of B.1.1.529.2.86.1.1.44.1, S:R346T, Cameroon/France
• + JN.1.56 Alias of B.1.1.529.2.86.1.1.56, ORF3a:K399R
• + JN.1.56.1 Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea

2024-05-31

• + KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253
• + KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L
• + KR.1.2 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q
• + KR.2 Alias of B.1.1.529.2.86.1.1.1.5.2, S:F456V, L176F, USA/Canada
• + KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A)
• + KR.4 Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E
• + KR.5 Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil
• + KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del
• + KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada
• + KP.3.2.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R
• + KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, C19716T, Singapore/Taiwan/Canada
• + KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia
• + LN.1 Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T
• + LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I
• + JN.1.55 Alias of B.1.1.529.2.86.1.1.55, ORF1a:K399R
• + JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand
• + JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil

2024-05-30

• + KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore
• + KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P
• + KP.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.4, S:W258R, on A2611C branch

2024-05-29

• + LL.1 Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA
• + KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N
• + LM.1 Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L
• + JN.1.52 Alias of B.1.1.529.2.86.1.1.52, ORF1a:K3353R
• + JN.1.53 Alias of B.1.1.529.2.86.1.1.53, C15720T, Senegal
• + JN.1.53.1 Alias of B.1.1.529.2.86.1.1.53.1, C583T
• + JN.1.54 Alias of B.1.1.529.2.86.1.1.54, A9085G
• + JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain
• + LN.1 Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T
• + LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I

2024-05-28

• + Lineage Description
• + JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y
• + LK.1 Alias of B.1.1.529.2.86.1.1.7.5, S:445P, ORF1a:R1170C, USA/Canada
• + KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510
• + KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del
• + KP.2.7 Alias of B.1.1.529.2.86.1.1.11.1.2.7, S:S31F, after T22795G
• + KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F
• + KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain
• + KP.4.2.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2.2, S:F59I
• + LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del
• + LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru
• + JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V
• + JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana
• + LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I
• + LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H
• + JN.1.23.1 Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil
• + JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L
• + JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T
• + JN.1.51 Alias of B.1.1.529.2.86.1.1.51, C4795T
• + JN.1.51.1 Alias of B.1.1.529.2.86.1.1.51.1, S:F456L
• + LJ.1 Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N
• + JN.1.52 Alias of B.1.1.529.2.86.1.1.51, ORF1a:K3353R
• + XDK.4 C25626T
• + XDK.4.1 S:F456L, France/Luxembourg
• + XDK.5 S:F456L, C22388T, Spain
• + XDK.6 S:F456L, S:R237K, S:Q1201K, England

2024-05-24

• + KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V
• + JN.1.42.2 Alias of B.1.1.529.2.86.1.1.42.2, S:R346T, Peru from #2494
• + LD.1 Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I from #2547
• + JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe from #2587

2024-05-19

• + JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe

2024-05-18

• + JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T
• + KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada

2024-05-17

• + KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G
• + KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T
• + KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, S:R204P
• + KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I
• + JN.1.39.2 Alias of B.1.1.529.2.86.1.1.39.2, S:R346T, T111C
• + JN.1.39.3 Alias of B.1.1.529.2.86.1.1.39.3, S:A67V, T111C, C5512T, China from #2498 (originally known as JN.1.33)
• + JN.3.3 Alias of B.1.1.529.2.86.1.3.3, A5641G, C14478T, C21676T
• + JN.11.1 Alias of B.1.1.529.2.86.1.11.1, S:L455S
• + JN.15 Alias of B.1.1.529.2.86.1.15, C24319T, Japan
• + JN.16 Alias of B.1.1.529.2.86.1.16, ORF3a:T229I, Japan
• + JN.17 Alias of B.1.1.529.2.86.1.17, C12781T, Japan
• + JN.18 Alias of B.1.1.529.2.86.1.18, T11614C
• + JN.19 Alias of B.1.1.529.2.86.1.19, A14601G, Japan
• + JQ.2.1.1 Alias of B.1.1.529.2.86.3.2.1.1, S:F456L, South Africa
• + BA.2.86.6 Alias of B.1.1.529.2.86.6, C9226T
• + *JN.1.33 Redesignated as JN.1.39.3, Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from #2498

2024-05-16

• + LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T
• + LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V
• + LE.1.2 Alias of B.1.1.529.2.86.1.1.4.7.1.2, S:K304N
• + LE.2 Alias of B.1.1.529.2.86.1.1.4.7.2, S:R346S, C7423T
• + KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C
• + KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:A475V
• + KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N
• + KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D
• + KP.2.6 Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R
• + KP.2.7 Alias of B.1.1.529.2.86.1.1.11.1.2.7, S:S31F
• + KP.2.8 Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P
• + KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I
• + KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore
• + KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England
• + KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia
• + KP.4.2.1 Alias of B.1.1.529.2.86.1.1.11.1.4.2.1, S:S31F
• + LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F
• + LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L
• + KW.1.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia
• + LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia
• + JN.1.39.1 Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C
• + JN.1.42.2 Alias of B.1.1.529.2.86.1.1.42.2, S:R346T, Peru
• + LD.1 Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I
• + JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India
• + JN.1.49 Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India
• + JN.1.49.1 Alias of B.1.1.529.2.86.1.1.49.1, S:R346T
• + JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L
• + XDK.1.1 S:K182R, S:E213G, India
• + XDK.1.2 S:F456L
• + XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T
• + XDK.3 S:F456L, ORF1a:F3397L
• + XDQ.1.1 S:S60P, C1594T, Japan
• + XDR.1 S:F59S, G6077T, A14031G, C26801T, Brazil/Peru

2024-04-19

• + XDQ.2 S:N487D, Vietnam
• + XDQ.3 S:681H, Indonesia
• + XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471

2024-04-17

• + JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V from #2547

2024-04-16

• + CH.1.1.18 Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T, from #1747
• + JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T
• + JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F, from sars-cov-2-variants/lineage-proposals#1157
• + LC.1 Alias of B.1.1.529.2.86.1.1.1.7.1, S:R346T
• + JN.1.4.4 Alias of B.1.1.529.2.86.1.1.4.4, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C)
• + JN.1.8.4 Alias of B.1.1.529.2.86.1.1.8.4, S:G946R
• + JN.1.9.2 Alias of B.1.1.529.2.86.1.1.9.2, S:R346T
• + LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C)
• + KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I
• + KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N
• + KP.4 Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India
• + KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T
• + KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R
• + KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T
• + LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T
• + LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I
• + JN.1.24.1 Alias of B.1.1.529.2.86.1.1.24.1, S:R346T
• + KW.1.2 Alias of B.1.1.529.2.86.1.1.28.1.1.2, S:K529T, Australia
• + JN.1.32.1 Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H
• + JN.1.47 Alias of B.1.1.529.2.86.1.1.47, C8074T, C7594T
• + JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico
• + JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA
• + JN.1.48 Alias of B.1.1.529.2.86.1.1.48, G29134T, after T18471C, India
• + JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V
• + *BA.5.4 Withdrawn: England, Denmark, Spain and Scotland. Sublineage of BA.5.2.1 (with G11837T (ORF1a:V3858L) (nsp6:V289L)), from #618

2024-04-13

• + KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L, after C28498T, from sars-cov-2-variants/lineage-proposals#1253
• + KV.2 Alias of B.1.1.529.2.86.1.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.4.6 Alias of B.1.1.529.2.86.1.1.4.6, S:T572I, after T18453C, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.7.1 Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371
• + JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343
• + JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089
• + KP.2.1 Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K, from sars-cov-2-variants/lineage-proposals#1440
• + KP.2.2 Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R, from sars-cov-2-variants/lineage-proposals#1446
• + KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410
• + JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414
• + JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441
• + JN.1.26 Alias of B.1.1.529.2.86.1.1.26, S:R346T, after C26894T, USA, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.28.1 Alias of B.1.1.529.2.86.1.1.28.1, ORF1a:P1640L, C19545T, C24370T, from sars-cov-2-variants/lineage-proposals#1244
• + KW.1 Alias of B.1.1.529.2.86.1.1.28.1.1, S:T572I, Australia, from sars-cov-2-variants/lineage-proposals#1244
• + KW.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L, ORF1b:R2009K, Australia/Japan, from sars-cov-2-variants/lineage-proposals#1244
• + JN.1.30.1 Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India, from sars-cov-2-variants/lineage-proposals#1089
• + KU.2 Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.31 Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T, from sars-cov-2-variants/lineage-proposals#1319
• + JN.1.35 Alias of B.1.1.529.2.86.1.1.35, S:S680Y, after T18471C, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1362
• + JN.1.36 Alias of B.1.1.529.2.86.1.1.36, S:Q677H, after A29086T, from sars-cov-2-variants/lineage-proposals#1326
• + JN.1.36.1 Alias of B.1.1.529.2.86.1.1.36.1, S:S680F, South Korea, from sars-cov-2-variants/lineage-proposals#1326
• + JN.1.40 Alias of B.1.1.529.2.86.1.1.40, S:S31P, Mexico, from sars-cov-2-variants/lineage-proposals#1451
• + JN.1.41 Alias of B.1.1.529.2.86.1.1.41, S:S1252F, on A29086T, USA, from sars-cov-2-variants/lineage-proposals#1256
• + JN.1.42.1 Alias of B.1.1.529.2.86.1.1.42.1, S:F59S, from sars-cov-2-variants/lineage-proposals#1474
• + JN.1.44 Alias of B.1.1.529.2.86.1.1.44, ORF6:P57L, from sars-cov-2-variants/lineage-proposals#987
• + JN.13.1 Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386
• + JQ.2.1 Alias of B.1.1.529.2.86.3.2.1, S:L455S, South Africa, from sars-cov-2-variants/lineage-proposals#1373
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068
• + GE.1.2.2 Alias of XBB.2.3.10.1.2.2, S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya, from sars-cov-2-variants/lineage-proposals#1340
• + XDD.1.1.1 S:R346T, from sars-cov-2-variants/lineage-proposals#1450
• + XDK.1 S:R346T, G11596A, from sars-cov-2-variants/lineage-proposals#1407
• + XDP.1 S:E1092D, after ORF1a:L397P, ORF1a:H388Y, from sars-cov-2-variants/lineage-proposals#1358

2024-04-06

• + KZ.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1, S:R346T from #2548
• + KZ.1.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I from #2548
• + KV.1 Alias of B.1.1.529.2.86.1.1.4.5.1, S:S680F, after C28948T then A2356T
• + JN.1.33 Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from #2498
• + JN.14 Alias of B.1.1.529.2.86.1.14, C29614T, S:S680F, Thailand/Japan，from #2424
• + BQ.1.1.43 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43 USA, S:Q613H (G23401C), C26292T
• + XBB.1.9 ORF1a:G1819S, ORF1a:T4175I, on ORF9b:I5T branch
• + XBB.1.9.2 S:F486P (after A27507C, A16878T), Indonesia/Singapore, from #1602
• + EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and jmcbroome/auto-pango-designation#193
• + EG.4.3 Alias of XBB.1.9.2.4.3, S:Q613H (G23401C)
• + XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from jmcbroome/auto-pango-designation#193
• + FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, on G28371T (N:G33V, ORF9b:V30L) branch, China
• + XBB.1.22 Defined by S:486P, on ORF9b:I5T branch, from #1704
• + XBB.1.23 Defined by E:S68F, on ORF9b:I5T branch, South East Asia
• + XBB.1.25 Defined by C673T, G487T, on ORF9b:I5T branch
• + XBB.1.26 Defined by T10663C, on ORF9b:I5T branch, Canada
• + XBB.2.5 S:Q613H, from jmcbroome/auto-pango-designation#193
• + XBB.3 ORF1b:I1988V, on ORF1a:D82G branch
• + XBB.3.1 S:Q677R, after T1993C, India-TN/Singapore, from #1241
• + XBB.3.2 S:M177T
• + XBB.3.3 S:V1122L, after T1993C, USA
• + XBB.3.4 S:E990D
• + XBB.4 S:K444R, on ORF1a:D82G branch, from #1239
• + XBB.5 S:A653V, after G5518A, on ORF1a:D82G branch, India-TN, Singapore, Australia
• + XBB.6 C14178T, on ORF1a:D82G branch, USA/India/England
• + XBB.6.1 S:F486P, USA, from #1459
• + XBB.7 S:Q613H, after G5518A, on ORF1a:D82G branch, Malaysia
• + XBB.8 T14574C, on ORF1a:D82G branch, India/Malaysia/Brunei
• + XBB.8.1 S:486P, ORF1a:K634N, ORF1a:K3353R, Malaysia
• + XBB.9 N:T49I, on ORF1a:D82G branch, Philippines
• + XBC Recombinant lineage of BA.2 and B.1.617.2(21I), predominantly in Philippines, from #1100
• + XBF Recombinant lineage of BA.5.2* and CJ.1, Australia, from #1259
• + XBF.4 Europe, ORF1a:H417Y, from jmcbroome/auto-pango-designation#193
• + XBK.1 S:P1162S, from #1551 and jmcbroome/auto-pango-designation#193
• + XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:I1114T, most with S:L455F(G22927T), China, from #2351
• + XDQ Recombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 23605 and 24377), most with T22846C, Vietnam/Japan/South Korea, from #2481
• + XDQ.1 S:A475V, Japan/South Korea, from #2497
• + XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608, 27916-28296, 28959-29534), USA/China, from #2402
• + XDV.1 S:F456L (T22930A), on C11572T branch, Hong Kong
• + *HK.1.1 Withdrawn as smaller than thought (only 6 sequences have 257V and G22927T): Alias of XBB.1.9.2.5.1.1.1.1, S:L455F (G22927T), China (now considered as an HK.3+S:G257D branch being misplaced with HK.1+S:L455F)

2024-04-05

• + KZ.1 Alias of B.1.1.529.2.86.1.1.1.6.1, ORF1b:V1092F
• + KZ.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1, S:R346T
• + KZ.1.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I
• + JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T

2024-04-04

• + KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N from #2510
• + KW.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L, ORF1b:R2009K, Australia/Japan
• + XDU Recombinant lineage of BA.2.86.1, XBB.1.16 (breakpoint between 11957-12729), Japan, from #2502

2024-04-03

• + KV.1 Alias of B.1.1.529.2.86.1.1.4.5.1, S:S680F
• + KV.2 Alias of B.1.1.529.2.86.1.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA
• + JN.1.4.7 Alias of B.1.1.529.2.86.1.1.4.7, ORF3a:G18D
• + JN.1.42.1 Alias of B.1.1.529.2.86.1.1.42.1, S:F59S
• + JN.1.46 Alias of B.1.1.529.2.86.1.1.46, ORF1a:L3116F, T4885C
• + XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19326-21608, 27915-28297, 28958-29535), from #2402
• + XDV.1 S:F456L (T22930A), on C11572T branch

2024-03-30

• + KY.1 Alias of B.1.1.529.2.86.1.1.8.2.1, ORF1a:N3774D, Nigeria
• + JN.1.8.3 Alias of B.1.1.529.2.86.1.1.8.3, C13821T, C14925T
• + JN.1.45 Alias of B.1.1.529.2.86.1.1.45, G18756T
• + JN.14 Alias of B.1.1.529.2.86.1.14, C29614T, S:S680F, Thailand/Japan

2024-03-27

• + JN.2.2.1 Alias of B.1.1.529.2.86.1.2.2.1, S:N487D, Netherlands
• + XDP.1 S:E1092D, after ORF1a:L397P, ORF1a:H388Y
• + XDU Recombinant lineage of BA.2.86.1, BA.2.86.1 (breakpoint between 11957-12729), Japan, from #2502

2024-03-26

• + Lineage Description
• + KV.1 Alias of B.1.1.529.2.86.1.1.4.5, S:S680F,
• + KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N
• + JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C
• + JN.1.28.1 Alias of B.1.1.529.2.86.1.1.28.1, ORF1a:P1640L, C19545T, C24370T
• + KW.1 Alias of B.1.1.529.2.86.1.1.28.1.1, S:T572I, Australia
• + KU.1 Alias of B.1.1.529.2.86.1.1.30.1.1, S:K182Q
• + KU.2 Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L
• + JN.1.36.1 Alias of B.1.1.529.2.86.1.1.36.1, S:S680F, South Korea
• + JN.1.37 Alias of B.1.1.529.2.86.1.1.37, S:S680F
• + JN.1.38 Alias of B.1.1.529.2.86.1.1.38, ORF1b:R1736K, USA
• + JN.1.39 Alias of B.1.1.529.2.86.1.1.39, G2782T
• + JN.1.40 Alias of B.1.1.529.2.86.1.1.40, S:S31P, Mexico
• + JN.1.41 Alias of B.1.1.529.2.86.1.1.41, S:S1252F, on A29086T, USA
• + JN.1.42 Alias of B.1.1.529.2.86.1.1.42, C5581A, South America
• + JN.1.43 Alias of B.1.1.529.2.86.1.1.43, A25237G
• + JN.1.43.1 Alias of B.1.1.529.2.86.1.1.43.1, C19488T, C29218T, Brazil
• + JN.1.44 Alias of B.1.1.529.2.86.1.1.44, ORF6:P57L
• + XDD.1.1.1 S:R346T

2024-03-21

• + JQ.2.1 Alias of B.1.1.529.2.86.3.2.1, S:L455S, South Africa

2024-03-20

• + KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L, after C28498T
• + JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F,from sars-cov-2-variants/lineage-proposals#1157
• + KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
• + KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
• + KP.2.1 Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K
• + KP.2.2 Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R
• + KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L,from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T,from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.30.1 Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India
• + JN.1.33 Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from https://github.com/cov-lineages/pango-designation/issues/2498

2024-03-18

• + KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E
• + JN.1.33 Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China
• + JN.1.34 Alias of B.1.1.529.2.86.1.1.34, S:S704L
• + JN.1.35 Alias of B.1.1.529.2.86.1.1.35, S:S680Y, after T18471C, Australia/New Zealand
• + JN.1.36 Alias of B.1.1.529.2.86.1.1.36, S:Q677H, after A29086T
• + GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S, ORF7a-ORF8 possibly completely deleted, from sars-cov-2-variants/lineage-proposals#1103
• + KT.1 Alias of XBB.2.3.10.1.2.1.1, S:K77R, US/UK
• + KT.1.1 Alias of XBB.2.3.10.1.2.1.1.1, C683T, G15957A, USA
• + KT.1.2 Alias of XBB.2.3.10.1.2.1.1.2, ORF1b:N2328S, C583T
• + GE.1.2.2 Alias of XBB.2.3.10.1.2.2, S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya

2024-03-15

• + JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L,from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.4.4 Alias of B.1.1.529.2.86.1.1.4.4, S:R346T,from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.4.5 Alias of B.1.1.529.2.86.1.1.4.5, ORF8:S103L, after T18453C, from #2426
• + JN.1.4.6 Alias of B.1.1.529.2.86.1.1.4.6, S:T572I, after T18453C
• + JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386
• + KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L
• + JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T
• + JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N
• + JN.1.27 Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA, from sars-cov-2-variants/lineage-proposals#1403
• + JN.1.30 Alias of B.1.1.529.2.86.1.1.30, G21255T
• + JN.1.31 Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T
• + JN.1.32 Alias of B.1.1.529.2.86.1.1.32, S:T572I, directly on JN.1 polytomy

2024-03-10

• + JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L
• + JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F
• + JN.1.4.2 Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462
• + JN.1.4.4 Alias of B.1.1.529.2.86.1.1.4.4, S:R346T
• + JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G
• + JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464
• + JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA
• + JN.1.26 Alias of B.1.1.529.2.86.1.1.26, S:R346T, after C26894T, USA
• + JN.1.27 Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA
• + JN.1.28 Alias of B.1.1.529.2.86.1.1.28, C24034T, A29700G, East Asia/Oceania
• + JN.1.29 Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil

2024-03-07

• + JN.13 Alias of B.1.1.529.2.86.1.13, A14397G
• + JN.13.1 Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia

2024-03-06

• + JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476
• + JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492
• + JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322
• + JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175
• + KQ.1 Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487
• + JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253
• + KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364
• + JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T,C25680T, USA, from #2464
• + JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253
• + JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162
• + JN.1.22 Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465
• + JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102
• + JQ.2 Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068
• + GN.1.4 Alias of XBB.1.5.73.1.4, S:G181V, Peru, from #2349

2024-03-05

• + JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L, after C9142T, from #2476
• + JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T, after C9142T
• + KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L, after C28498T
• + JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India
• + KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T
• + KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy
• + JN.1.24 Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA
• + JN.1.25 Alias of B.1.1.529.2.86.1.1.25, C706T, A7708T, India
• + JN.1.25.1 Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India
• + XDK.1 S:R346T, G11596A
• + XDQ.1 S:A475V, Japan

2024-03-02

• + JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T
• + KQ.1 Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA
• + JN.1.7.1 Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England
• + JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas
• + JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T,C25680T, USA
• + JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA

2024-02-23

• + KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R

2024-02-21

• + JN.1.23 Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488

2024-02-13

• + JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L, from #2476
• + JN.1.4.3 Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487
• + KN.1 Alias of XBB.1.5.70.1.10.1.1, S:Y200C, Brazil, from #2479
• + KN.1.1 Alias of XBB.1.5.70.1.10.1.1.1, S:N450D, Brazil, from #2479
• + HK.13.2.1 Alias of XBB.1.9.2.5.1.1.13.2.1, S:T250I, N:T379I, Greece, from #2480
• + XDT Recombinant lineage of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485

2024-02-05

• + JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V
• + JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy
• + JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V
• + JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy
• + JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y
• + JN.1.22 Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T
• + XDS Recombinant lineage of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506), from sars-cov-2-variants/lineage-proposals#1267

2024-02-03

• + JN.1.4.2 Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, USA, from #2462

2024-02-02

• + JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland
• + JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland
• + JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, USA
• + JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, USA
• + JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V
• + JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L
• + JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA
• + BA.2.87 Alias of B.1.1.529.2.87, C18744T, no C9866T
• + BA.2.87.1 Alias of B.1.1.529.2.87.1, saltation with 15+ spike AA mutations, South Africa, from #2484
• + GK.1.10.1 Alias of XBB.1.5.70.1.10.1, S:A475V, C29668T, Brazil, from #2479
• + XDQ Recombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 223605 and 24377), from #2481
• + XDR Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477

2024-02-01

• + KM.1 Alias of XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal

2024-01-22

• + JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, India
• + JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T
• + JN.11 Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303
• + JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G

2024-01-17

• + DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F (G22927T), S:F456L (T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
• + KG.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I, from sars-cov-2-variants/lineage-proposals#951
• + DV.7.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain, from sars-cov-2-variants/lineage-proposals#860
• + JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147
• + JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, ORF1b:H2388Y, France/Sweden, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089
• + JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410
• + JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135
• + JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433
• + JN.2.5 Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania, from sars-cov-2-variants/lineage-proposals#1173
• + JN.3.1 Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORF7a:T28I, Spain
• + JN.3.2 Alias of B.1.1.529.2.86.1.3.2, N:H300Y, ORF1a:P892S, from #2445
• + JN.3.2.1 Alias of B.1.1.529.2.86.1.3.2.1, S:F456V, N:S327L, Germany, from #2445
• + BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L (T22928C), Reunion
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068
• + XBB.1.5.70 S:L455F (G22927T), S:F456L (T22928C), ORF1a:A4068S, Brazil, from #1982
• + GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil, from sars-cov-2-variants/lineage-proposals#643
• + GK.1.8.1 Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay, from sars-cov-2-variants/lineage-proposals#1127
• + GK.1.11 Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil, from sars-cov-2-variants/lineage-proposals#643
• + GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA, from sars-cov-2-variants/lineage-proposals#643
• + GN.1 Alias of XBB.1.5.73.1, S:F456L (T22928C), Peru/Costa Rica
• + HA.1 Alias of XBB.1.5.86.1, S:F456L (T22930A), Brazil/Canada
• + HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L (T22928C), USA, from #2237
• + JD.1 Alias of XBB.1.5.102.1, S:L455F (G22927T), S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071
• + KK.1 Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA, from sars-cov-2-variants/lineage-proposals#1210
• + KK.2 Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil, from sars-cov-2-variants/lineage-proposals#1277
• + XBB.1.5.108 S:F456L (T22930A), S:K304N , from sars-cov-2-variants/lineage-proposals#550
• + XBB.1.5.109 S:F456L (T22928C), ORF1a:T654A, from #2262
• + FL.1.5 Alias of XBB.1.9.1.1.5, S:F456L (T22928C), ORF1b:K2557R, from #2036
• + HN.4.1 Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S, from sars-cov-2-variants/lineage-proposals#1054
• + HN.4.1.1 Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada, from sars-cov-2-variants/lineage-proposals#1054
• + HN.4.2 Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia, from sars-cov-2-variants/lineage-proposals#971
• + FL.1.8 Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia, from sars-cov-2-variants/lineage-proposals#1058
• + FL.2.7 Alias of XBB.1.9.1.2.7, ORF1a:A2618T, from sars-cov-2-variants/lineage-proposals#552
• + FL.2.7.1 Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa, from sars-cov-2-variants/lineage-proposals#552
• + FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y, from sars-cov-2-variants/lineage-proposals#28
• + FL.15.1 Alias of XBB.1.9.1.15.1, S:L455F (G22927T), ORF1a:T2007I, on ORF1a:S2185N branch, from #2293
• + FL.19.1 Alias of XBB.1.9.1.19.1, S:F456L (T22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138
• + FL.20 Alias of XBB.1.9.1.20, S:F456L (T22928C), S:Q52H, Spain, from #2072
• + FL.24.1 Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia, from sars-cov-2-variants/lineage-proposals#789
• + FL.32.1 Alias of XBB.1.9.1.32.1, S:F456L (T22928C), USA, from sars-cov-2-variants/lineage-proposals#719
• + FL.38 Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia, from sars-cov-2-variants/lineage-proposals#1001
• + HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:L455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631
• + HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F (G22927T), Singapore, from sars-cov-2-variants/lineage-proposals#537
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#414
• + HK.3.2.2 Alias of XBB.1.9.2.5.1.1.3.2.2, ORF8:M1L, S:N185D, China/Australia, from sars-cov-2-variants/lineage-proposals#867
• + HK.3.14 Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia, from sars-cov-2-variants/lineage-proposals#978
• + HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F (G22927T), on C11779T branch, China, from #2230
• + HK.20 Alias of XBB.1.9.2.5.1.1.20, S:L455F (G22927T), on ORF1a:P2144S branch, China, from sars-cov-2-variants/lineage-proposals#537
• + HK.22 Alias of XBB.1.9.2.5.1.1.22, S:L452Q, S:L455F (G22927T), Australia/China, from #2357
• + HK.23.1 Alias of XBB.1.9.2.5.1.1.23.1, S:L455F (G22927T), ORF1a:T2906N, from sars-cov-2-variants/lineage-proposals#537
• + HK.24.1 Alias of XBB.1.9.2.5.1.1.24.1, S:L455F (G22927T), Australia, from sars-cov-2-variants/lineage-proposals#537
• + HK.26 Alias of XBB.1.9.2.5.1.1.26, S:L455F (G22927T), ORF3a:L52I, on 14988C branch, Finland, from sars-cov-2-variants/lineage-proposals#763
• + HK.27.1 Alias of XBB.1.9.2.5.1.1.27.1, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#525
• + HK.33 Alias of XBB.1.9.2.5.1.1.33, S:L455F (G22927T) on C2644T branch, North America, from sars-cov-2-variants/lineage-proposals#537
• + JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F (G22927T), S:S704L, Europe, from #2231
• + JG.3.4 Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA, from sars-cov-2-variants/lineage-proposals#1081
• + JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F (G22927T), ORF3a:I47V, China/Japan, from #2208
• + KL.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada, from sars-cov-2-variants/lineage-proposals#1174
• + HV.1.8 Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA, from #2432
• + HV.1.9 Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand, from sars-cov-2-variants/lineage-proposals#957
• + HV.1.10 Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA, from sars-cov-2-variants/lineage-proposals#1044
• + HV.2 Alias of XBB.1.9.2.5.1.6.2, S:L455F (G22927T), Canada, from sars-cov-2-variants/lineage-proposals#537
• + EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F (G22927T), China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537
• + EG.5.1.19 Alias of XBB.1.9.2.5.1.19, S:L455F (G22927T), ORF1b:K1383R, ORF3a:M260K, from sars-cov-2-variants/lineage-proposals#537
• + EG.6.1 Alias of XBB.1.9.2.6.1, S:F456L (T22928C), Israel/Japan/Canada, from #1950
• + EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England, from sars-cov-2-variants/lineage-proposals#56
• + FP.2 Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore, from sars-cov-2-variants/lineage-proposals#31
• + GY.1.1 Alias of XBB.1.16.2.1.1, S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#804
• + GY.8 Alias of XBB.1.16.2.8, S:F456L (T22928C), C25452T, Japan, from #2148
• + XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China/Malaysia
• + JF.1 Alias of XBB.1.16.6.1, S:L455F (G22927T), USA, from #2207
• + JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada, from sars-cov-2-variants/lineage-proposals#643
• + JF.3 Alias of XBB.1.16.6.3, S:Q14H, S:L455F (G22927T), S:S810L, USA/Australia, from sars-cov-2-variants/lineage-proposals#976
• + XBB.1.16.26 S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#685
• + XBB.1.16.27 S:F456L (T22928C), S:E554K, ORF1a:A3889T, France, from #2345
• + XBB.1.16.28 S:V1230A, S:Q613H, S:Q675K, Russia, from sars-cov-2-variants/lineage-proposals#1000
• + XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago, from sars-cov-2-variants/lineage-proposals#524
• + XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany, from sars-cov-2-variants/lineage-proposals#554
• + GA.10.1 Alias of XBB.1.17.1.10.1, S:L455F (G22927T), S:F456L (T22928C), S:K478R, ORF1a:A776V, ORF1a:F1214S, ORF1b:K1947R, from sars-cov-2-variants/lineage-proposals#919
• + GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L (T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355
• + GW.5 Alias of XBB.1.19.1.5, S:L455F (G22927T), S:F456L (T22928C), S:K478I, Pakistan, from #2142
• + FY.1.2.1 Alias of XBB.1.22.1.1.2.1, S:W64L, from sars-cov-2-variants/lineage-proposals#863
• + FW.1.1.1 Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK, from sars-cov-2-variants/lineage-proposals#1242
• + HB.1 Alias of XBB.1.34.2.1, S:F456L (T22928C), USA/China/Canada, from sars-cov-2-variants/lineage-proposals#217
• + XBB.1.48 S:L455F (G22927T), S:F456L (T22928C), C2509T, on C541T, pre ORF8:8* branch, Pakistan, from #1681
• + GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S, from sars-cov-2-variants/lineage-proposals#1103
• + XBB.2.3.21 S:T883I, ORF1a:D3042N, 670T reversion, Japan, from sars-cov-2-variants/lineage-proposals#281
• + XBC.1.1.2 ORF7b:L32F, Australia
• + XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong, from sars-cov-2-variants/lineage-proposals#110
• + XBL.3.1 S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand, from sars-cov-2-variants/lineage-proposals#44
• + XDA.1 S:L176F, from sars-cov-2-variants/lineage-proposals#1031
• + XDD.1 S:S704L, from sars-cov-2-variants/lineage-proposals#1203
• + XDD.1.1 S:I584V, from sars-cov-2-variants/lineage-proposals#1203
• + XDD.2 S:T307I, from sars-cov-2-variants/lineage-proposals#1176
• + XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus, from sars-cov-2-variants/lineage-proposals#128
• + XDN Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448
• + XDP Recombinant lineage of JN.1.4 and FL.15 (breakpoint between 26834 and 27809), from #2451
• + *HK.1.1 Withdrawn as smaller than thought (only 6 sequences have 257V and G22927T): Alias of XBB.1.9.2.5.1.1.1.1, S:L455F (G22927T), China
• + *HK.10 Withdrawn unless lineage grows: Alias of XBB.1.9.2.5.1.1.10, S:L455F (G22927T), on C19983T branch, China (now considered as HK.3 with homoplastic C19983T)

2024-01-12

• + JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada
• + JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446

2024-01-11

• + KK.1 Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA
• + KK.2 Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil
• + HK.3.14 Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia
• + KL.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada
• + KL.1.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1.1, S:H1101Y, Canada
• + HV.1.11 Alias of XBB.1.9.2.5.1.6.1.11, S:N450D, USA
• + FW.1.1.1 Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK
• + XDM Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163

2024-01-10

• + JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France
• + JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, ORF1b:H2388Y, France/Sweden
• + JN.1.5 Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419
• + JN.1.6 Alias of B.1.1.529.2.86.1.1.6, G22627A
• + JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden
• + JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France
• + JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I
• + JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, USA/Denmark
• + JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada
• + JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands
• + JN.2.3 Alias of B.1.1.529.2.86.1.2.3, S:V193L, from #2442
• + JN.2.4 Alias of B.1.1.529.2.86.1.2.4, S:L242F, Sweden
• + JN.2.5 Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania
• + HN.8 Alias of XBB.1.9.1.1.5.1.8, S:ins248KRD, ORF1a:E2042D, not requiring S:494P, Haiti/USA, from #2438
• + HV.1.8 Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA
• + HV.1.9 Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand
• + HV.1.10 Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA
• + XDD.1 S:S704L
• + XDD.1.1 S:I584V
• + XDD.2 S:T307I

2024-01-09

• + JN.1.4 Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381
• + JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284
• + XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:L455F and S:I1114T, China, from #2351
• + *KD.5 Withdrawn: Alias of XBC.1.3.1.5, S:L244F, Australia, indel artefact caused false S:L244F (#2405)

2023-12-29

• + JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada

2023-12-22

• + GK.1.8.1 Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay
• + GK.1.11 Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil
• + GK.1.11.1 Alias of XBB.1.5.70.1.11.1, S:I68V, Brazil
• + GN.1.4 Alias of XBB.1.5.73.1.4, S:G181V, Peru
• + FL.2.7 Alias of XBB.1.9.1.2.7, ORF1a:A2618T
• + FL.2.7.1 Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa
• + XBB.1.16.32 S:S490P, South Africa/USA
• + KJ.1 Alias of XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa
• + JC.5.1 Alias of XBB.1.41.1.5.1, S:Q173K, USA
• + JW.1.1 Alias of XBB.1.41.3.1.1, S:Q14K, South Africa

2023-12-21

• + JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands
• + JF.1.1 Alias of XBB.1.16.6.1.1, ORF1a:S2030L
• + JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF2a:P2005S, Canada
• + JF.1.1.2 Alias of XBB.1.16.6.1.1.2, S:V1264L
• + JF.4 Alias of XBB.1.16.6.4, ORF1a:S212L, ORF8:A15V
• + JE.1.1.1 Alias of XBB.2.3.3.1.2.1.1.1.1, S:V1122A, from #2390
• + KH.1 Alias of XBB.2.3.3.1.2.1.1.1.1.1, S:E554K, on N:L13F, ORF1a:R135S (reversion) branch, from #2390

2023-12-20

• + FL.39 Alias of XBB.1.9.1.39, ORF1a:E633K, Russia

2023-12-18

• + KG.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I
• + KG.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.2, S:H49Y, S:A264D, S:G485R, Spain/Canada
• + DV.7.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain
• + DV.7.1.9 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.9, S:R1185H, Australia
• + JD.1.1.7 Alias of XBB.1.5.102.1.1.7, ORF1b:R2257S
• + JD.1.1.8 Alias of XBB.1.5.102.1.1.8, ORF1a:N1094K, without C19185T, Brazil
• + JD.1.2.2 Alias of XBB.1.5.102.1.2.2, S:A1078T, Brazil
• + XBB.1.5.108 S:F456L, S:K304N
• + XBB.1.5.109 S:F456L, ORF1a:T654A
• + XBB.1.5.110 ORF1aT4129I, Mexico
• + HN.4.1 Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S
• + HN.4.1.1 Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada
• + HN.4.2 Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia
• + HN.7 Alias of XBB.1.9.1.1.5.1.7, C6388T, T20028C, C20115T, Europe
• + FL.1.8 Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia
• + FL.24.1 Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia
• + FL.38 Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia
• + FL.39 Alias of XBB.1.9.1.39, ORF1a:E663K, Russia
• + FL.39.1 Alias of XBB.1.9.1.39.1, S:K478R, S:P521S, Russia
• + FL.40 Alias of XBB.1.9.1.40, ORF1a:I3758V, Russia
• + JG.3.4 Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA
• + HV.2 Alias of XBB.1.9.2.5.1.6.2, S:L455F, Canada
• + JF.3 Alias of XBB.1.16.6.3, S:L455F, S:Q14H, S:S810L, USA/Australia
• + XBB.1.16.28 S:V1230A, S:Q613H, S:Q675K, Russia
• + XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago
• + XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany
• + XBB.1.16.31 T9004C, on C7765T branch
• + FY.1.2.1 Alias of XBB.1.22.1.1.2.1, S:W64L
• + FY.1.2.2 Alias of XBB.1.22.1.1.2.2, S:V1129I
• + FY.1.2.3 Alias of XBB.1.22.1.1.2.3, S:D215H
• + GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S
• + XBB.2.3.21 S:T883I, ORF1a:D3042N, 670T reversion, Japan
• + XBB.2.3.22 S:S937T, ORF8:K94T, Romania/Bulgaria
• + XCF.3 S:R78M
• + XDA.1 S:L176F
• + XDJ Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997
• + XDK Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415

2023-12-16

• + HK.34.1 Alias of XBB.1.9.2.5.1.1.34.1, S:K356T, Singapore, from sars-cov-2-variants/lineage-proposals#1048

2023-12-12

• + DV.7.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.6, S:Q183K, N:A217S, from sars-cov-2-variants/lineage-proposals#765
• + JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987
• + JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I after C9142T, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097
• + JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087
• + JN.4 Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark, from sars-cov-2-variants/lineage-proposals#1009
• + JN.5.1 Alias of B.1.1.529.2.86.1.5.1, S:A475S, T2950A, A28052G, C29541T, England/Belgium, from sars-cov-2-variants/lineage-proposals#954
• + JN.7 Alias of B.1.1.529.2.86.1.7, S:G594S, Denmark, from sars-cov-2-variants/lineage-proposals#856
• + JN.10 Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954
• + BA.2.86.4 Alias of B.1.1.529.2.86.4, S:A222V, ORF1a:V3892A, from sars-cov-2-variants/lineage-proposals#1032
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068
• + JD.1.1.5 Alias of XBB.1.5.102.1.1.5, S:Q677R, USA/Canada, from sars-cov-2-variants/lineage-proposals#1079
• + KC.1 Alias of XBB.1.9.1.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe, from sars-cov-2-variants/lineage-proposals#614
• + KF.1 Alias of XBB.1.9.1.15.1.1.1, S:P251H, Australia/Canada, from sars-cov-2-variants/lineage-proposals#890
• + KF.2 Alias of XBB.1.9.1.15.1.1.2, S:E183D, England/Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1111
• + HK.3.2.2 Alias of XBB.1.9.2.5.1.1.3.2.2, S:N185D, Australia, from sars-cov-2-variants/lineage-proposals#867
• + HK.3.9 Alias of XBB.1.9.2.5.1.1.3.9, S:T732I, Australia, from sars-cov-2-variants/lineage-proposals#1092
• + HK.3.10 Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S, from sars-cov-2-variants/lineage-proposals#1055
• + HK.3.12 Alias of XBB.1.9.2.5.1.1.3.12, S:A688T, USA, from sars-cov-2-variants/lineage-proposals#886
• + HK.3.13 Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China, from sars-cov-2-variants/lineage-proposals#601
• + HK.20 Alias of XBB.1.9.2.5.1.1.20, S:L455F, on ORF1a:P2144S branch, China, from sars-cov-2-variants/lineage-proposals#537
• + HK.20.1 Alias of XBB.1.9.2.5.1.1.20.1, S:G482R, from sars-cov-2-variants/lineage-proposals#537
• + HK.23.1 Alias of XBB.1.9.2.5.1.1.23.1, S:L455F, ORF1a:T2906N, from sars-cov-2-variants/lineage-proposals#537
• + HK.23.1.1 Alias of XBB.1.9.2.5.1.1.23.1.1, S:A348S, China/Canada, from sars-cov-2-variants/lineage-proposals#537
• + HK.24.1 Alias of XBB.1.9.2.5.1.1.24.1, S:L455F, Australia, from sars-cov-2-variants/lineage-proposals#537
• + HK.26 Alias of XBB.1.9.2.5.1.1.26, S:L455F, ORF3a:L52I, on 14988C branch, Finland, from sars-cov-2-variants/lineage-proposals#763
• + HK.26.1 Alias of XBB.1.9.2.5.1.1.26.1, S:A475V, Finland, formerly HK.3.11, from sars-cov-2-variants/lineage-proposals#763
• + HK.27.1 Alias of XBB.1.9.2.5.1.1.27.1, S:L455F, China, from sars-cov-2-variants/lineage-proposals#525
• + HK.32 Alias of XBB.1.9.2.5.1.1.32, S:Q14R, ORF1a:S2193F, China, from sars-cov-2-variants/lineage-proposals#601
• + HK.33 Alias of XBB.1.9.2.5.1.1.33, S:L455F on C2644T branch, North America, from sars-cov-2-variants/lineage-proposals#537
• + HK.34 Alias of XBB.1.9.2.5.1.1.34, S:F186S, ORF1a:V3660M, on C2644T branch, Singapore, from sars-cov-2-variants/lineage-proposals#905
• + HK.34.1 Alias of XBB.1.9.2.5.1.1.34, S:K356T, Singapore, from sars-cov-2-variants/lineage-proposals#1048
• + HV.1.2 Alias of XBB.1.9.2.5.1.6.1.2, S:S514F, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#957
• + HV.1.4 Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA, from sars-cov-2-variants/lineage-proposals#957
• + HV.1.5 Alias of XBB.1.9.2.5.1.6.1.5, S:L1265F, USA/Canada, from sars-cov-2-variants/lineage-proposals#957
• + HV.1.6.1 Alias of XBB.1.9.2.5.1.6.1.6.1, S:S704L, Canada, from sars-cov-2-variants/lineage-proposals#957
• + HV.1.7 Alias of XBB.1.9.2.5.1.6.1.7, S:S221L, Canada, from sars-cov-2-variants/lineage-proposals#957
• + KB.3 Alias of XBB.1.9.2.5.1.8.2, S:A83T, from sars-cov-2-variants/lineage-proposals#1052
• + KB.4 Alias of XBB.1.9.2.5.1.8.2, S:T95I, from sars-cov-2-variants/lineage-proposals#891
• + JR.1.1.1 Alias of XBB.1.9.2.5.1.11.1.1.1, S:K356Q, Thailand, from sars-cov-2-variants/lineage-proposals#1015
• + EG.5.1.16 Alias of XBB.1.9.2.5.1.16, ORF1b:A2431V, from sars-cov-2-variants/lineage-proposals#899
• + EG.5.1.17 Alias of XBB.1.9.2.5.1.17, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537
• + EG.5.1.19 Alias of XBB.1.9.2.5.1.19, S:L455F, ORF1b:K1383R, ORF3a:M260K, from sars-cov-2-variants/lineage-proposals#537
• + EG.5.2.4 Alias of XBB.1.9.2.5.2.4, S:K679R, on ORF3a:I118V branch, from sars-cov-2-variants/lineage-proposals#770
• + GY.1.1 Alias of XBB.1.16.2.1.1, S:F456L, S:L455F, China, from sars-cov-2-variants/lineage-proposals#804
• + GY.1.1.1 Alias of XBB.1.16.2.1.1.1, S:A475V, Thailand, from sars-cov-2-variants/lineage-proposals#804
• + XBB.1.16.26 S:L455F, S:F456L, China, from sars-cov-2-variants/lineage-proposals#685
• + GA.10.1 Alias of XBB.1.17.1.10.1, S:L455F, S:F456L, S:K478R, ORF1a:A776V, ORF1a:F1214S, ORF1b:K1947R, from sars-cov-2-variants/lineage-proposals#919
• + KE.2 Alias of XBB.1.19.1.5.1.1.2, S:S704L, UK, from sars-cov-2-variants/lineage-proposals#945
• + FY.5.2 Alias of XBB.1.22.1.5.2, S:L176F, Indonesia, on A6019G branch, from sars-cov-2-variants/lineage-proposals#267
• + FY.5.4 Alias of XBB.1.22.1.5.4, S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch, from sars-cov-2-variants/lineage-proposals#929
• + FY.5.5.1 Alias of XBB.1.22.1.5.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929
• + FY.8.1 Alias of XBB.1.22.1.8.1, S:478R, T4579A, from sars-cov-2-variants/lineage-proposals#1002
• + FY.8.1.1 Alias of XBB.1.22.1.8.1.1, S:P521Q, ORF1b:V1149L, from sars-cov-2-variants/lineage-proposals#1002
• + XBC.1.3.1 ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#542
• + KD.1 Alias of XBC.1.3.1.1, S:R346S, Australia, from sars-cov-2-variants/lineage-proposals#673

2023-12-04

• + GA.10 Alias of XBB.1.17.1.10, ORF1a:V4520I, Mali
• + GA.10.1 Alias of XBB.1.17.1.10.1, S:L455F, S:F456L, S:K478R, ORF1a:A776V, ORF1a:F1214S, ORF1b:K1947R

2023-12-03

• + JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I after C9142T, France/Sweden/Poland
• + JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada
• + JD.1.1.5 Alias of XBB.1.5.102.1.1.5, S:Q677R, USA/Canada
• + JD.1.1.6 Alias of XBB.1.5.102.1.1.6, S:M153V, Brazil
• + KF.1 Alias of XBB.1.9.1.15.1.1.1, S:P251H, Australia/Canada
• + KF.2 Alias of XBB.1.9.1.15.1.1.2, S:E183D, England/Australia/New Zealand
• + HK.3.11 Alias of XBB.1.9.2.5.1.1.3.11, S:F186S, China
• + HK.3.12 Alias of XBB.1.9.2.5.1.1.3.12, S:A688T, USA
• + HK.3.13 Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China
• + HK.32 Alias of XBB.1.9.2.5.1.1.32, S:Q14R, ORF1a:S2193F, China
• + HK.33 Alias of XBB.1.9.2.5.1.1.33, S:L455F on C2644T branch, North America
• + HK.34 Alias of XBB.1.9.2.5.1.1.34, S:F186S, ORF1a:V3660M, on C2644T branch, Singapore
• + HK.34.1 Alias of XBB.1.9.2.5.1.1.34, S:K356T, Singapore
• + HV.1.5 Alias of XBB.1.9.2.5.1.6.1.5, S:L1265F, USA/Canada
• + HV.1.6 Alias of XBB.1.9.2.5.1.6.1.6, ORF1a:T1794I, ORF1a:P2018S, Canada/USA
• + HV.1.6.1 Alias of XBB.1.9.2.5.1.6.1.6.1, S:S704L, Canada
• + HV.1.7 Alias of XBB.1.9.2.5.1.6.1.7, S:S221L, Canada
• + GY.9 Alias of XBB.1.16.2.9, S:F186S, Europe
• + KE.1 Alias of XBB.1.19.1.5.1.1.1, S:F186S, England/Wales
• + KE.2 Alias of XBB.1.19.1.5.1.1.2, S:S704L, UK
• + KE.3 Alias of XBB.1.19.1.5.1.1.3, ORF1a:L3641S, ORF1a:T5131I, ORF7a:M1K, UK
• + FY.5.2 Alias of XBB.1.22.1.5.2, S:L176F, Indonesia, on A6019G branch
• + FY.5.3 Alias of XBB.1.22.1.5.3, S:A222V, Singapore/Japan, on A6019G branch
• + FY.5.4 Alias of XBB.1.22.1.5.4, S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch
• + FY.5.5 Alias of XBB.1.22.1.5.5, ORF1a:M2796I
• + FY.5.5.1 Alias of XBB.1.22.1.5.5.1, S:T572I
• + FY.8.1.1 Alias of XBB.1.22.1.8.1.1, S:P521Q, ORF1b:V1149L

2023-12-02

• + JP.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1.1, S:G1219V, ORF1a:T1542I, South Africa
• + BN.1.2.8 Alias of B.1.1.529.2.75.5.1.2.8, S:N703K, Russia
• + XBC.1.3.1 ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand
• + KD.1 Alias of XBC.1.3.1.1, S:R346S, Australia
• + KD.2 Alias of XBC.1.3.1.2, ORF1a:M3661L, ORF1a:M3934I, Australia/New Zealand
• + KD.3 Alias of XBC.1.3.1.3, C10519T, C19524T, New Zealand
• + KD.4 Alias of XBC.1.3.1.4, ORF1a:K394R, ORF1a:L730F, ORF1a:T965I, Australia/Japan
• + KD.5 Alias of XBC.1.3.1.5, S:L244F, Australia
• + XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus

2023-12-01

• + EG.10.1.1 Alias of XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S
• + GY.1.1 Alias of XBB.1.16.2.1.1, S:F456L, S:L455F, China
• + GY.1.1.1 Alias of XBB.1.16.2.1.1.1, S:A475V, Thailand
• + FY.8.1 Alias of XBB.1.22.1.8.1, S:478R, T4579A

2023-11-30

• + JR.1.1.1 Alias of XBB.1.9.2.5.1.11.1.1.1, S:K356Q, Thailand

2023-11-29

• + DV.7.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.6, S:Q183K, N:A217S
• + DV.7.1.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.7, S:V90I
• + JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France
• + BA.2.86.5 Alias of B.1.1.529.2.86.5, S:I197V, C5575T, T6085C, T23278C
• + JB.1.1 Alias of XBB.1.5.53.1.1, S:K478R, South Africa
• + KC.1 Alias of XBB.1.9.1.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe
• + KC.1.1 Alias of XBB.1.9.1.1.5.2.1.1, S:V1228L, England
• + HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, on T14988C branch UK/USA, from #2184
• + HK.26 Alias of XBB.1.9.2.5.1.1.26, S:L455F, ORF3a:L52I, on 14988C branch, Finland
• + HK.26.1 Alias of XBB.1.9.2.5.1.1.26.1, S:A475V, Finland, formerly HK.3.11
• + HK.27 Alias of XBB.1.9.2.5.1.1.27, ORF1a:T1589I, China
• + HK.27.1 Alias of XBB.1.9.2.5.1.1.27.1, S:L455F, China
• + HK.27.1.1 Alias of XBB.1.9.2.5.1.1.27.1.1, S:Q14H, China
• + HK.28 Alias of XBB.1.9.2.5.1.1.28, C19170T, China
• + HK.29 Alias of XBB.1.9.2.5.1.1.29, ORF1a:G2509D, North America
• + HK.30 Alias of XBB.1.9.2.5.1.1.30, T26609C, China
• + HK.31 Alias of XBB.1.9.2.5.1.1.31, ORF1a:G604S
• + EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F, China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537
• + KB.2 Alias of XBB.1.9.2.5.1.8.2, S:R214H
• + KB.3 Alias of XBB.1.9.2.5.1.8.2, S:A83T
• + KB.4 Alias of XBB.1.9.2.5.1.8.2, S:T95I
• + EG.5.1.12 Alias of XBB.1.9.2.5.1.12, T26972C, C28909T
• + EG.5.1.13 Alias of XBB.1.9.2.5.1.13, C12439T
• + EG.5.1.14 Alias of XBB.1.9.2.5.1.14, C16017T, C19524T
• + EG.5.1.15 Alias of XBB.1.9.2.5.1.15, ORF1a:T753I
• + EG.5.1.16 Alias of XBB.1.9.2.5.1.16, ORF1b:A2431V
• + EG.5.1.17 Alias of XBB.1.9.2.5.1.17, S:L455F (G22927C), China
• + EG.5.1.18 Alias of XBB.1.9.2.5.1.18, ORF1a:G3002S, ORF3a:S220I
• + EG.5.1.19 Alias of XBB.1.9.2.5.1.19, S:L455F, ORF1b:K1383R, ORF3a:M260K
• + *HK.3.11 Withdrawn, as part of 14988C sublineage of EG.5.1.1, not HK.3: Alias of XBB.1.9.2.5.1.1.3.11, S:A475V, Finland/Denmark/Sweden

2023-11-28

• + HK.25 Alias of XBB.1.9.2.5.1.1.25, S:K356T, S:H681R, N:P365L, and 10 more nucs, Germany/Austria/France/US, from #2327 and sars-cov-2-variants/lineage-proposals#986

2023-11-25

• + FL.37 Alias of XBB.1.9.1.37, C547T, C29614T
• + HK.3.2.2 Alias of XBB.1.9.2.5.1.1.3.2.2, S:N185D, Australia
• + HK.3.9 Alias of XBB.1.9.2.5.1.1.3.9, S:T732I, Australia
• + HK.3.10 Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S
• + HK.3.11 Alias of XBB.1.9.2.5.1.1.3.11, S:A475V, Finland/Denmark/Sweden
• + HK.23 Alias of XBB.1.9.2.5.1.1.23, ORF8:A65V
• + HK.23.1 Alias of XBB.1.9.2.5.1.1.23.1, S:L455F, ORF1a:T2906N
• + HK.23.1.1 Alias of XBB.1.9.2.5.1.1.23.1.1, S:A348S, China/Canada
• + HK.24 Alias of XBB.1.9.2.5.1.1.24, S:E654K
• + HK.24.1 Alias of XBB.1.9.2.5.1.1.24.1, S:L455F, Australia
• + EG.5.2.4 Alias of XBB.1.9.2.5.2.4, S:K679R, on ORF3a:I118V branch
• + XDF Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088
• + XDG Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348

2023-11-22

• + JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia
• + JN.5.1 Alias of B.1.1.529.2.86.1.5.1, S:A475S, T2950A, A28052G, C29541T, England/Belgium
• + JN.10 Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France
• + BA.2.86.4 Alias of B.1.1.529.2.86.4, S:A222V, ORF1a:V3892A
• + JD.1.1.4 Alias of XBB.1.5.102.1.1.4, S:E554G, Australia, from #2380
• + FL.15.2 Alias of XBB.1.9.1.15.2, S:Q14H, C1684T, China, from sars-cov-2-variants/lineage-proposals#578
• + FL.15.4 Alias of XBB.1.9.1.15.4, S:Q14H, on G6819A branch, from #2359
• + HK.3.2.1 Alias of XBB.1.9.2.5.1.1.3.2.1, S:Q677H, Canada, from #2362
• + HK.3.8 Alias of XBB.1.9.2.5.1.1.3.8, S:E554K, China/Sweden, from #2377
• + HK.8.1 Alias of XBB.1.9.2.5.1.1.8.1, S:D1153Y, China, from #2356
• + KB.1 Alias of XBB.1.9.2.5.1.8.1, S:E654V, China, from #2347
• + XBB.1.16.27 S:F456L, S:E554K, ORF1a:A3889T, France, from #2345
• + XDE Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352

2023-11-18

• + JN.3.1 Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORf7a:T28I, Spain
• + JN.7 Alias of B.1.1.529.2.86.1.7, S:G594S, Denmark
• + JN.8 Alias of B.1.1.529.2.86.1.8, S:T299I, Sweden/Denmark
• + JN.9 Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands
• + GK.1.10 Alias of XBB.1.5.70.1.10, Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375
• + HR.1.1 Alias of XBB.1.5.77.1.1, S:K304N, Costa Rica, from #2372
• + JG.3.3 Alias of XBB.1.9.2.5.1.3.3.3, S:A83S, Belgium, from #2363
• + XDD Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024

2023-11-17

• + JG.3.2 Alias of XBB.1.9.2.5.1.3.3.2, S:N450D, Canada, from #2376

2023-11-15

• + JN.5 Alias of B.1.1.529.2.86.1.5, N:T135I
• + JN.6 Alias of B.1.1.529.2.86.1.6, S:V193L

2023-11-13

• + JD.1.2.1 Alias of XBB.1.5.102.1.2.1, S:E554Q, from sars-cov-2-variants/lineage-proposals#870
• + HK.3.2 Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, C853T, China，from sars-cov-2-variants/lineage-proposals#730
• + HK.21 Alias of XBB.1.9.2.5.1.1.21, S:T470N, S:796H, from #2367
• + HK.22 Alias of XBB.1.9.2.5.1.1.22, S:L455F, S:L452Q, Australia/China, from #2357
• + XBB.1.16.26 S:L455F, S:F456L, China
• + XCT.1 S:S704L, from #2358

2023-11-12

• + BA.2.86.1 Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236
• + JN.4 Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark

2023-11-03

• + HK.20 Alias of XBB.1.9.2.5.1.1.20, S:L455F, on ORF1a:P2144S branch, China
• + HK.20.1 Alias of XBB.1.9.2.5.1.1.20.1, S:G482R

2023-10-21

• + JV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France, from sars-cov-2-variants/lineage-proposals#760
• + DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R, from sars-cov-2-variants/lineage-proposals#851
• + DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain, from sars-cov-2-variants/lineage-proposals#729
• + JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants/lineage-proposals#892
• + JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068
• + FD.5.1 Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru, from sars-cov-2-variants/lineage-proposals#385
• + GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia, from #2314
• + GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia, from sars-cov-2-variants/lineage-proposals#643
• + GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia, from sars-cov-2-variants/lineage-proposals#643
• + GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY, from sars-cov-2-variants/lineage-proposals#823
• + GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil, from sars-cov-2-variants/lineage-proposals#736
• + GK.5.1 Alias of XBB.1.5.70.5.1, S:E180K, from sars-cov-2-variants/lineage-proposals#736
• + GK.6 Alias of XBB.1.5.70.6, S:N556K, S:E583A, from sars-cov-2-variants/lineage-proposals#715
• + GK.7 Alias of XBB.1.5.70.7, N:D3G, from sars-cov-2-variants/lineage-proposals#907
• + GK.8 Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil, from sars-cov-2-variants/lineage-proposals#909
• + GK.8.1 Alias of XBB.1.5.70.8.1, S:N185I, S:A475V, from sars-cov-2-variants/lineage-proposals#909
• + GK.10 Alias of XBB.1.5.70.10, S:E554G, Brazil, from sars-cov-2-variants/lineage-proposals#761
• + GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816
• + JD.1.1.3 Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark, from sars-cov-2-variants/lineage-proposals#896
• + KA.1 Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain, from sars-cov-2-variants/lineage-proposals#822
• + JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil, from sars-cov-2-variants/lineage-proposals#224
• + HN.2 Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S, from sars-cov-2-variants/lineage-proposals#676
• + HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-proposals#676
• + HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G, from sars-cov-2-variants/lineage-proposals#383
• + HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K, from sars-cov-2-variants/lineage-proposals#936
• + FL.13.4 Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#638
• + FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K, from sars-cov-2-variants/lineage-proposals#638
• + FL.13.5 Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina, from sars-cov-2-variants/lineage-proposals#692
• + FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines, from sars-cov-2-variants/lineage-proposals#381
• + HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631
• + HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore, from sars-cov-2-variants/lineage-proposals#537
• + HK.3.4 Alias of XBB.1.9.2.5.1.1.3.4, S:P809S, from sars-cov-2-variants/lineage-proposals#764
• + HK.3.5 Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore, from sars-cov-2-variants/lineage-proposals#865
• + HK.3.6 Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China, from sars-cov-2-variants/lineage-proposals#809
• + HK.3.7 Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China, from sars-cov-2-variants/lineage-proposals#793
• + HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#537
• + HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537
• + HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H, from sars-cov-2-variants/lineage-proposals#943
• + HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China, from sars-cov-2-variants/lineage-proposals#537
• + HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch, from sars-cov-2-variants/lineage-proposals#588
• + HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L, from sars-cov-2-variants/lineage-proposals#841
• + HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R, from sars-cov-2-variants/lineage-proposals#800
• + JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829
• + HV.1.1 Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#866
• + HV.1.3 Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA, from sars-cov-2-variants/lineage-proposals#924
• + JR.1.1 Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C), from sars-cov-2-variants/lineage-proposals#537
• + EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel, from sars-cov-2-variants/lineage-proposals#826
• + GA.4.1.3 Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I, from sars-cov-2-variants/lineage-proposals#968
• + GA.4.3 Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania, from sars-cov-2-variants/lineage-proposals#908
• + GA.7.1 Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R, from sars-cov-2-variants/lineage-proposals#755
• + FE.1.1.5 Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil, from sars-cov-2-variants/lineage-proposals#556
• + GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T, from sars-cov-2-variants/lineage-proposals#815
• + GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A, from sars-cov-2-variants/lineage-proposals#815
• + FY.1.4 Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA, from sars-cov-2-variants/lineage-proposals#165
• + FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929
• + FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N, from sars-cov-2-variants/lineage-proposals#790
• + FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan, from sars-cov-2-variants/lineage-proposals#637
• + FY.8 Alias of XBB.1.22.1.8, S:T572I, from sars-cov-2-variants/lineage-proposals#635
• + JC.2 Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece, from sars-cov-2-variants/lineage-proposals#961
• + JC.5 Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y, from sars-cov-2-variants/lineage-proposals#629
• + HH.2.1 Alias of XBB.2.3.2.2.1, S:K478R, England/France, from sars-cov-2-variants/lineage-proposals#236
• + HH.5 Alias of XBB.2.3.2.5, S:K147N, India, from sars-cov-2-variants/lineage-proposals#438
• + HH.6 Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India, from sars-cov-2-variants/lineage-proposals#236
• + HH.8.1 Alias of XBB.2.3.2.8.1, S:K478R, from sars-cov-2-variants/lineage-proposals#236
• + JE.1.1 Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R, from sars-cov-2-variants/lineage-proposals#827
• + GJ.1.2.6 Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#726
• + GJ.1.2.7 Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch, from sars-cov-2-variants/lineage-proposals#726
• + GJ.5 Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T, from sars-cov-2-variants/lineage-proposals#429
• + GJ.5.1 Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V, from sars-cov-2-variants/lineage-proposals#429
• + GJ.6 Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India, from sars-cov-2-variants/lineage-proposals#675
• + GJ.7 Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand, from sars-cov-2-variants/lineage-proposals#439
• + XBB.2.3.15 ORF1a:I4308V, from sars-cov-2-variants/lineage-proposals#722
• + JS.2 Alias of XBB.2.3.15.2, S:T323I, from sars-cov-2-variants/lineage-proposals#722
• + XBB.2.3.18 S:F456L (T22930A), S:N450D, S:1231A, India, from sars-cov-2-variants/lineage-proposals#738
• + JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India, from sars-cov-2-variants/lineage-proposals#731
• + XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia, from sars-cov-2-variants/lineage-proposals#479
• + JT.1 Alias of XBC.1.6.6.1, S:V445A, from sars-cov-2-variants/lineage-proposals#203
• + XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England, from sars-cov-2-variants/lineage-proposals#839
• + XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969

2023-10-19

• + A.2.5.1 Costa Rica lineage, from #33
• + A.2.5.3 Predominantly Ecuador lineage, from #168
• + A.27 Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background, from #11.
• + A.28 This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop), from #12
• + A.29 Lineage circulating in multiple countries, from #78
• + A.30 Lineage in several countries, associated with travel from Tanzania, from #138
• + C.1.2 Alias of B.1.1.1.1.2, mostly South Africa, from #139
• + C.36.3 Alias of B.1.1.1.36.3, Europe and USA lineage, from #80
• + C.36.3.1 Alias of B.1.1.1.36.3.1, Europe and USA lineage, from #80
• + C.37 Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from #52
• + C.37.1 Alias of B.1.1.1.37.1, lineage outside of South America, from #158
• + C.38 Alias of B.1.1.1.38, lineage in multiple countries, formally B.1.1.527, from #150
• + C.40 Alias of B.1.1.1.40, Peru lineage, from #203
• + Q.1 Alias of B.1.1.7.1, predominantly Lithuania lineage, from #39
• + Q.2 Alias of B.1.1.7.2, Italy lineage, from #79
• + Q.3 Alias of B.1.1.7.3, USA lineage, from #92
• + Q.4 Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from #176
• + Q.5 Alias of B.1.1.7.5, Israel lineage, from #165
• + Q.6 Alias of B.1.1.7.6, France lineage, from #183
• + Q.7 Alias of B.1.1.7.7, predominantly France lineage, from #183
• + Q.8 Alias of B.1.1.7.8, Sri Lanka lineage, from #197
• + P.1 Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77
• + P.1.2 Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, from #56
• + P.1.3 Alias of B.1.1.28.1.3, Brazil lineage, from #141
• + P.1.4 Alias of B.1.1.28.1.4, Brazil lineage, from #141
• + P.1.5 Alias of B.1.1.28.1.5, Brazil lineage, from #141
• + P.1.6 Alias of B.1.1.28.1.6, Brazil lineage, from #141
• + P.1.7 Alias of B.1.1.28.1.7, Brazil lineage, from #141
• + P.1.7.1 Alias of B.1.1.28.1.7.1, Peru lineage, from #326
• + P.1.8 Alias of B.1.1.28.1.8, Brazil lineage, from #164
• + P.1.9 Alias of B.1.1.28.1.9, Brazil lineage, from #174
• + P.1.10 Alias of B.1.1.28.1.10, predominantly USA lineage, from #179
• + P.1.10.1 Alias of B.1.1.28.1.10.1, Aruba lineage, from #179
• + P.1.10.2 Alias of B.1.1.28.1.10.2, Mexico lineage, from #179
• + P.1.11 Alias of B.1.1.28.1.11, Brazil lineage, from #164
• + P.1.12 Alias of B.1.1.28.1.12, predominantly Peru lineage, from #212
• + P.1.12.1 Sublineage of P.1.12 reported predominantly from Peru and USA, from #282
• + P.1.13 Alias of B.1.1.28.1.13, USA lineage, from #231
• + P.1.14 Alias of B.1.1.28.1.14, predominantly Canada lineage, from #231
• + P.1.15 Alias of B.1.1.28.1.15, predominantly Chile lineage, from #231
• + P.1.16 Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from #231
• + P.1.17 Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from #231
• + P.1.17.1 Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from #231
• + P.4 Alias of B.1.1.28.4, Brazil lineage, from #68
• + P.5 Alias of B.1.1.28.5, Brazil lineage, from #86
• + P.6 Alias of B.1.1.28.6, Uruguay lineage, from #148
• + P.7 Alias of B.1.1.28.7, Brazil lineage, from #29
• + B.1.1.29 Wales lineage, formerly temporarily assigned B.1.1.439 due to an error, from #50
• + N.3 Alias of B.1.1.33.3, Argentinian
• + N.5 Alias of B.1.1.33.5, Argentinian
• + B.1.1.70 European Lineage
• + B.1.1.72 USA lineage
• + B.1.1.77 USA Lineage
• + B.1.1.93 USA Lineage
• + B.1.1.98 USA lineage
• + B.1.1.118 USA Lineage (TX)
• + B.1.1.128 USA lineage
• + B.1.1.132 USA Lineage
• + B.1.1.148 USA lineage
• + B.1.1.182 USA
• + B.1.1.208 UK
• + B.1.1.222 USA/Mexico
• + B.1.1.309 Now all England, was USA, so probably split from something
• + R.1 Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries, from #17
• + R.2 Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K, from #18
• + B.1.1.318 Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del), from #15
• + AZ.1 Alias of B.1.1.318.1, Canada lineage, from #171
• + AZ.2 Alias of B.1.1.318.2, predominantly Greece lineage, from #171
• + AZ.2.1 Alias of B.1.1.318.2.1, Switzerland lineage, from #171
• + AZ.3 Alias of B.1.1.318.3, USA lineage, from #171
• + AZ.4 Alias of B.1.1.318.4, Ireland lineage, from #171
• + AZ.5 Alias of B.1.1.318.5, Mauritius lineage, from #171
• + AZ.6 Alias of B.1.1.318.6, Canada lineage, from #171
• + B.1.1.349 Russia, one "Congo"
• + AT.1 Alias of B.1.1.370.1, Russia and Finland lineage, from #47
• + B.1.1.432 USA and Mexico
• + B.1.1.434 Mostly USA lineage with some UK and Canada (was B.1.1.304)
• + B.1.1.440 USA and Mexico
• + B.1.1.461 USA TX lineage
• + B.1.1.463 USA CA lineage
• + B.1.1.464 USA lineage
• + AW.1 Alias of B.1.1.464.1, Canadian lineage, from #103
• + B.1.1.467 USA lineage (NY)
• + B.1.1.480 USA Lineage
• + B.1.1.482 USA Lineage
• + AV.1 Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from #73
• + B.1.1.486 USA Lineage
• + B.1.1.512 USA/Mexico
• + B.1.1.513 USA lineage (NY)
• + B.1.1.514 USA lineage
• + B.1.1.523 Lineage in multiple countries, predominantly Russia, from #69
• + B.1.1.524 Predominantly Russia lineage, from #85
• + B.1.1.525 Predominantly Russia lineage, from #85
• + B.1.1.526 India lineage, previously designated B.1.624, from #91
• + B.1.1.528 South Africa lineage, from #177
• + B.1.1.529 South Africa and Botswana lineage, from #343
• + BA.1 Alias of B.1.1.529.1, from #361
• + BA.1.1 Alias of B.1.1.529.1.1, from #360
• + BC.2 Alias of B.1.1.529.1.1.1.2, Peru lineage, from #570
• + BA.1.1.17 Alias of B.1.1.529.1.1.17, USA lineage, from #452
• + BA.1.14.1 Alias of B.1.1.529.1.14.1, Brazil lineage, from #506
• + BA.1.15.2 Alias of B.1.1.529.1.15.2, USA lineage, from #508
• + BA.1.15.3 Alias of B.1.1.529.1.15.3, Peru lineage, from #573
• + BA.1.17.2 Alias of B.1.1.529.1.17.2, from #462
• + BD.1 Alias of B.1.1.529.1.17.2.1, UK lineage, from #461
• + BA.1.18 Alias of B.1.1.529.1.18, Europe and North America lineage, from #474
• + BA.1.20 Alias of B.1.1.529.1.20, USA lineage, from #375
• + BA.1.21 Alias of B.1.1.529.1.21, lineage, from #505
• + BA.1.21.1 Alias of B.1.1.529.1.21.1, Italy lineage, from #409
• + BA.1.22 Alias of B.1.1.529.1.22, Peru lineage, from #529
• + BA.1.23 Alias of B.1.1.529.1.23, mainly found in USA, from #663
• + BA.1.24 Alias of B.1.1.529.1.24, found in Spain, from #666
• + BA.2 Alias of B.1.1.529.2, from #361
• + BA.2.2.1 Alias of B.1.1.529.2.2.1, China lineage, from #675
• + BA.2.3.1 Alias of B.1.1.529.2.3.1, Japan lineage, from #495
• + BS.1 Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from #1052
• + BS.1.1 Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from #1097
• + BA.2.3.5 Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from #627
• + BA.2.3.6 Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from #633
• + BA.2.3.7 Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from #643
• + BA.2.3.16 Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from #524
• + BP.1 Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from #1009
• + BA.2.3.17 Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from #677
• + BA.2.3.18 Alias of B.1.1.529.2.3.18, Japan lineage, from #687
• + BA.2.3.19 Alias of B.1.1.529.2.3.19, found Brunei, from #824
• + BA.2.3.20 Alias of B.1.1.529.2.3.20, found globally, unclear origin, from #1013
• + CM.1 Alias of B.1.1.529.2.3.20.1, S:N17S, from #1129
• + CM.2.1 Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, from #1356
• + CM.5.2 Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from #1386
• + CM.12 Alias of B.1.1.529.2.3.20.12, Hong Kong, USA, Australia, Japan, ORF8:T12I, from #1481
• + BA.2.3.22 Alias of B.1.1.529.2.3.22, Philippines/Qatar/Germany, Δ69-70, W152L, N211-, L212I, S255F, R346T, K417T, F490A, A942S, from #1462
• + BA.2.8 Alias of B.1.1.529.2.8, UK lineage, from #486
• + BA.2.9 Alias of B.1.1.529.2.9, European lineage, from #432
• + BA.2.9.1 Alias of B.1.1.529.2.9.1, UK lineage, from #530
• + BA.2.9.3 Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from #630
• + BA.2.9.4 Alias of B.1.1.529.2.9.4, mainly found in France, from #635
• + BA.2.9.6 Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from #671
• + BA.2.9.7 Alias of B.1.1.529.2.9.7, found mainly in USA, from #864
• + BA.2.10 Alias of B.1.1.529.2.10, lineage, from #496
• + BJ.1 Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from #915
• + BA.2.10.2 Alias of B.1.1.529.2.10.2, mainly found in Japan, from #569
• + BA.2.10.3 Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from #609
• + BA.2.10.4 Alias of B.1.1.529.2.10.4, mainly found in India, from #898
• + BA.2.11 Alias of B.1.1.529.2.11, France lineage, from #491
• + BA.2.12 Alias of B.1.1.529.2.12, North America and Europe lineage, from #499
• + BA.2.12.1 Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499
• + BG.1 Alias of B.1.1.529.2.12.1.1, Peru lineage, from #679
• + BG.2 Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from #767
• + BG.3 Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from #784
• + BG.5 Alias of B.1.1.529.2.12.1.5, mainly found in USA, from #763
• + BG.6 Alias of B.1.1.529.2.12.1.6, Peru lineage, from #836
• + BG.7 Alias of B.1.1.529.2.12.1.7, found in Peru, from #1157
• + BA.2.12.2 Alias of B.1.1.529.2.12.2, mainly found in Australia, from #686
• + BA.2.13 Alias of B.1.1.529.2.13, Europe lineage, from #531
• + BA.2.13.1 Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from #785
• + BA.2.14 Alias of B.1.1.529.2.14, Denmark lineage, from #512
• + BA.2.15 Alias of B.1.1.529.2.15, South Africa lineage, from #533
• + BA.2.16 Alias of B.1.1.529.2.16, UK lineage, from #534
• + BA.2.17 Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from #520
• + BA.2.18 Alias of B.1.1.529.2.18, UK lineage, from #528
• + BA.2.19 Alias of B.1.1.529.2.19, Germany lineage, from #535
• + BA.2.20 Alias of B.1.1.529.2.20, Canada lineage, from #544
• + BA.2.21 Alias of B.1.1.529.2.21, Canada and USA lineage, from #547
• + BA.2.22 Alias of B.1.1.529.2.22, UK lineage, from #562
• + BA.2.23 Alias of B.1.1.529.2.23, UK lineage, from #546
• + BA.2.23.1 Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from #532
• + BA.2.31.1 Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from #819
• + BA.2.35 Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from #554
• + BA.2.36 Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from #565
• + BA.2.37 Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from #572
• + BA.2.38 Alias of B.1.1.529.2.38, lineage in India and other countries, from #541
• + BA.2.38.1 Alias of B.1.1.529.2.38.1, India lineage, from #809
• + BA.2.38.2 Alias of B.1.1.529.2.38.2, mainly found in India, from #828
• + BA.2.38.3 Alias of B.1.1.529.2.38.3, mainly found in India, from #840
• + BA.2.38.4 Alias of B.1.1.529.2.38.4, mainly found in India, from #746
• + BH.1 Alias of B.1.1.529.2.38.3.1, mainly found in India, from #913
• + BA.2.39 Alias of B.1.1.529.2.39, mainly found in England, from #575
• + BA.2.40 Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from #542
• + BA.2.40.1 Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from #542
• + BA.2.41 Alias of B.1.1.529.2.41, mainly found in England and Scotland, from #586
• + BA.2.42 Alias of B.1.1.529.2.42, mainly found in Australia, from #610
• + BA.2.43 Alias of B.1.1.529.2.43, mainly found in India, from #612
• + BA.2.44 Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from #613
• + BA.2.45 Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from #616
• + BA.2.46 Alias of B.1.1.529.2.46, mainly found in Scotland, from #626
• + BA.2.47 Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from #631
• + BA.2.48 Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from #634
• + BA.2.49 Alias of B.1.1.529.2.49, mainly found in France, England and USA, from #640
• + BA.2.50 Alias of B.1.1.529.2.50, mainly found in Scotland and England, from #641
• + BA.2.51 Alias of B.1.1.529.2.51, mainly found in Denmark, from #644
• + BA.2.52 Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from #648
• + BA.2.53 Alias of B.1.1.529.2.53, mainly found in Denmark, from #651
• + BA.2.54 Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from #658
• + BA.2.55 Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from #660
• + BA.2.56 Alias of B.1.1.529.2.56, mainly found in Europe, from #668
• + BA.2.56.1 Alias of B.1.1.529.2.56.1, mainly found in Japan, from #745
• + BA.2.59 Alias of B.1.1.529.2.59, mainly found in USA, from #672
• + BA.2.71 Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from #695
• + BA.2.72 Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from #698
• + BA.2.73 Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from #632
• + BA.2.74 Alias of B.1.1.529.2.74, mainly found in India, from #775
• + BA.2.75 Alias of B.1.1.529.2.75, mainly found in India, from #773
• + BA.2.75.1 Alias of B.1.1.529.2.75.1, mainly found in India, from #856
• + BL.1 Alias of B.1.1.529.2.75.1.1, mainly found in India, S:R346T on polytomy, from #944
• + BL.1.1 Alias of B.1.1.529.2.75.1.1.1, defined by S:G614S, from #1079
• + BL.1.2 Alias of B.1.1.529.2.75.1.1.2, mainly Austria, defined by S:G261D, S:V308L, from #1066
• + BL.1.3 Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, defined by S:F490L, from #1124
• + BL.2 Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
• + BL.3 Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
• + BL.5 Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from #1105
• + BL.6 Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from #1531
• + BA.2.75.2 Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, from #963
• + CA.1 Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, from #1063
• + BA.2.75.3 Alias of B.1.1.529.2.75.3, mainly found in India, from #965
• + BM.1 Alias of B.1.1.529.2.75.3.1, mainly found in India, from #965
• + CJ.1 Alias of B.1.1.529.2.75.3.1.1.1.1, S:S486P, from #1171
• + CJ.1.1 Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from #1384
• + CJ.1.3.1 Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan, from sars-cov-2-variants/lineage-proposals#287
• + CJ.1.3.2 Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea, from sars-cov-2-variants/lineage-proposals#287
• + BM.4 Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from #957
• + BM.4.1 Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from #957
• + CH.1 Alias of B.1.1.529.2.75.3.4.1.1.1, defined by S:K444T, from #1113
• + CH.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1, defined by S:L452R, from #1113
• + DV.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK, from #1626
• + DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain
• + CH.1.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.5, ORF3a:P104S, found mainly in Denmark and UK, from #1539
• + FS.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12.1, found mainly in Denmark, from #1816
• + CH.1.1.15 Alias of B.1.1.529.2.75.3.4.1.1.1.1.15, found mainly in Lithuania, Germany and UK, from #1726
• + FK.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1, found mainly in New Zealand and Australia, from #1718
• + FK.1.2.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.2, ORF1a:D139N, ORF1a:R226K, ORF1a:Q556K, ORF3a:T64N, T11737C, Australia/NZ
• + CH.1.1.18 Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T,from #1747
• + CH.1.1.22 Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from #1670
• + CH.1.1.23 Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from #1862
• + BM.5 Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from #1047
• + BA.2.75.4 Alias of B.1.1.529.2.75.4, mainly found in India, from #935
• + BR.2 Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from #1063
• + BR.2.1 Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from #1292
• + BR.3 Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from #1063
• + BR.4 Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from #1179
• + BR.5 Alias of B.1.1.529.2.75.4.5 found mainly in SouthKorea and usa, from #1345
• + BA.2.75.5 Alias of B.1.1.529.2.75.5, mainly found in India, from #947
• + BN.1 Alias of B.1.1.529.2.75.5.1, mainly found in India, from #994
• + FR.1.4 Alias of B.1.1.529.2.75.5.1.2.3.1.4, A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China, from sars-cov-2-variants/lineage-proposals#256
• + BN.1.3.1 Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from #1257
• + BN.1.3.2 Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from #1397
• + BN.1.3.5 Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from #1516
• + BN.1.3.9 Alias of B.1.1.529.2.75.5.1.3.9 S:V83F, from #1748
• + BN.1.9 Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from #1327
• + BN.2 Alias of B.1.1.529.2.75.5.2, mainly found in India, from #1021
• + BY.1.1.1 Alias of B.1.1.529.2.75.6.1.1.1, Europe, S:N185D, S:H207R,
• + BA.2.75.8 Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, from #1085
• + BA.2.76 Alias of B.1.1.529.2.76, mainly found in India and USA, from #787
• + BA.2.76.1 Alias of B.1.1.529.2.76.1, mainly found in India, from #899
• + BA.2.76.2 Alias of B.1.1.529.2.76.2, found in Japan, from #939
• + BA.2.77 Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from #732
• + BA.2.78 Alias of B.1.1.529.2.78, mainly found in India, from #814
• + BA.2.79 Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from #812
• + BA.2.79.1 Alias of B.1.1.529.2.79.1, India lineage, from #814
• + BA.2.80 Alias of B.1.1.529.2.80, found in Denmark, from #733
• + BA.2.82 Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from #874
• + BA.2.83 Alias of B.1.1.529.2.83, mainly found in India, from #1053
• + BA.2.85 Alias of B.1.1.529.2.85, mainly found in Japan, from #983
• + BA.2.86 Alias of B.1.1.529.2.86, from #2183
• + BA.3 Alias of B.1.1.529.3, from #367
• + BA.3.1 Alias of B.1.1.529.3.1, mainly found in Poland, from #540
• + BA.4 Alias of B.1.1.529.4, from #517
• + BA.4.1 Alias of B.1.1.529.4.1, mainly found in South Africa, from #548
• + BA.4.1.1 Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from #667
• + BA.4.1.8 Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from #800
• + BA.4.1.9 Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from #926
• + BA.4.1.10 Alias of B.1.1.529.4.1.10, mainly found in France, defined by S:N354D, S:R346T, from #1073
• + BA.4.1.11 Alias of B.1.1.529.4.1.11 found mainly in Denmark, from #1606
• + BA.4.6 Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741
• + BA.4.6.1 Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from #900
• + BA.4.6.2 Alias of B.1.1.529.4.6.2, Dominican Republic, USA, defined by S:V445A, from #1198
• + BA.4.6.3 Alias of B.1.1.529.4.6.3, defined by S:444N, S:460K, S:144-, from #1195
• + BA.4.7 Alias of B.1.1.529.4.7, mainly found in England, South Africa and Scotland, from #777
• + BA.4.8 Alias of B.1.1.529.4.8, mainly South Africa and Eswatini, from #670
• + BA.5 Alias of B.1.1.529.5, from #517
• + BA.5.1.2 Alias of B.1.1.529.5.1.2, mainly found in Denmark, Portugal and Luxembourg, from #790
• + BA.5.1.3 Alias of B.1.1.529.5.1.3, mainly found in Germany Portugal and Spain, from #765
• + BA.5.1.4 Alias of B.1.1.529.5.1.4, mainly found in Denmark and England, from #801
• + BA.5.1.5 Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from #835
• + BA.5.1.9 Alias of B.1.1.529.5.1.9, mainly found in England, Luxembourg, Scotland and Ireland, from #786
• + BA.5.1.10 Alias of B.1.1.529.5.1.10, mainly found in USA, Italy and England, from #901
• + BK.1 Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from #901
• + BA.5.1.11 Alias of B.1.1.529.5.1.11, mainly found in Denmark, from #908
• + BA.5.1.12 Alias of B.1.1.529.5.1.12, mainly found in Spain, from #902
• + DL.1 Alias of B.1.1.529.5.1.15.1, found mainly in Brazil and USA, from #1376
• + BA.5.1.18 Alias of B.1.1.529.5.1.18, mainly found in USA, from #930
• + BA.5.1.19 Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from #999
• + BA.5.1.20 Alias of B.1.1.529.5.1.20, mainly found in USA and Belgium, from #1000
• + BA.5.1.21 Alias of B.1.1.529.5.1.21, mainly found in Gambia and Japan, from #958
• + BT.1 Alias of B.1.1.529.5.1.21.1, mainly found in Japan, from #958
• + BT.2 Alias of B.1.1.529.5.1.21.2, mainly found in Denmark, Germany and France, from #1192
• + BA.5.1.22 Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1273L, from #1135
• + DH.1 Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from #1242
• + BA.5.1.23 Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from #1135
• + BA.5.1.24 Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from #1135
• + BA.5.1.25 Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from #1135
• + DJ.1 Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from #1245
• + DJ.1.1 Alias of B.1.1.529.5.1.25.1.1, found in Peru, from #1245
• + DJ.1.1.1 Alias of B.1.1.529.5.1.25.1.1.1 found mainly in Peru and USA, from #1407
• + DJ.1.2 Alias of B.1.1.529.5.1.25.1.2, found mainly in Peru, from #1379
• + DJ.1.3 Alias of B.1.1.529.5.1.25.1.3 found mainly in Peru, Colombia and USA, from #1409
• + BA.5.1.29 Alias of B.1.1.529.5.1.29, mainly found in Russia, Germany and Estonia, from #1060
• + CL.1 Alias of B.1.1.529.5.1.29.1, S:150E and S:460K, from #1187
• + BA.5.1.31 Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from #991
• + BA.5.1.32 Alias of B.1.1.529.5.1.32, found mainly in Germany and China, from #1488
• + EQ.1 Alias of B.1.1.529.5.1.33.1 S:Q14H, found mainly in Germany, France, Japan and Denmark, from #1522
• + BA.5.2 Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551
• + BA.5.2.1 Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from #657
• + BF.1 Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from #618
• + BF.3.1 Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from #825
• + BF.4 Alias of B.1.1.529.5.2.1.4, mainly found in England, from #788
• + BF.5.1 Alias of B.1.1.529.5.2.1.5.1 found mainly in Japan and Israel, from #1475
• + BF.5.2 Alias of B.1.1.529.5.2.1.5.2 found mainly in Japan, from #1476
• + BF.5.3 Alias of B.1.1.529.5.2.1.5.3 found mainly in Japan, from #1526
• + BF.6 Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from #821
• + BF.7 Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from #827
• + BF.7.1 Alias of B.1.1.529.5.2.1.7.1, mainly found in Germany, S:G261V, from #1132
• + BF.7.2 Alias of B.1.1.529.5.2.1.7.2, Denmark, S:H1101Y and S:V486I, from #1216
• + BF.7.4.1 Alias of B.1.1.529.5.2.1.7.4.1, found mainly in USA and Netherlands, from #1253
• + BF.7.4.2 Alias of B.1.1.529.5.2.1.7.4.2, Europe
• + BF.7.5.1 Alias of B.1.1.529.5.2.1.7.5.1, found mainly in Germany and Denmark, from #1317
• + BF.7.12 Alias of B.1.1.529.5.2.1.7.12, Europe, S:A942S
• + BF.7.13 Alias of B.1.1.529.5.2.1.7.13, Belgium, ORF1a:H388Y, ORF1a:H1160Y,
• + BF.7.14 Alias of B.1.1.529.5.2.1.7.14, China, S:C1243F, from #1470
• + BF.7.14.1 Alias of B.1.1.529.5.2.1.7.14.1 found mainly in China and Japan, contains S:V83F branch, from #1580
• + BF.7.14.7 Alias of B.1.1.529.5.2.1.7.14.7 found mainly in China, from #1672
• + BF.7.15 Alias of B.1.1.529.5.2.1.7.15, Japan, S:G257D & ORF1a:A1812V, from #1358
• + BF.10.1 Alias of B.1.1.529.5.2.1.10.1, found mainly in USA and Mexico, from #1442
• + BF.11 Alias of B.1.1.529.5.2.1.11, mainly found in England, S:R346T, from #837
• + BF.12 Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from #752
• + BF.13 Alias of B.1.1.529.5.2.1.13, mainly found in USA, from #883
• + BF.14 Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from #843
• + BF.15 Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from #893
• + BF.16 Alias of B.1.1.529.5.2.1.16, found in USA, from #942
• + BF.22 Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from #1010
• + BF.23 Alias of B.1.1.529.5.2.1.23, mainly found in Czechia, from #1036
• + BF.26 Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, on C5284T branch, from #1142
• + BF.27 Alias of B.1.1.529.5.2.1.27, Singapore lineage, defined by ORF1a:A2784V, from #1140
• + BF.28 Alias of B.1.1.529.5.2.1.28, Singapore lineage, defined by ORF1a:Q44L, from #1141
• + BF.29 Alias of B.1.1.529.5.2.1.29, mainly found in Denmark and USA, from #1162
• + BF.32 Alias of B.1.1.529.5.2.1.32, found mainly in USA, on C5284T branch, from #1250
• + BF.34 Alias of B.1.1.529.5.2.1.34, found mainly in UK and Canada, from #1233
• + BF.42 Alias of B.1.1.529.5.2.1.42, found in Japan, from #1855
• + BA.5.2.6 Alias of B.1.1.529.5.2.6, global lineage, S:R346T, from #870
• + CP.7 Alias of B.1.1.529.5.2.6.7 found mainly in Japan, from #1473
• + CP.8 Alias of B.1.1.529.5.2.6.8 ORF1b:D1939G, C15240T, A15486G, C28651T, from #1627
• + CP.8.1 Alias of B.1.1.529.5.2.6.8.1 found mainly in the Australia and Japan, from #1627
• + BA.5.2.7 Alias of B.1.1.529.5.2.7, global lineage, from #924
• + CY.1 Alias of B.1.1.529.5.2.7.1, found mainly in Belgium, Netherlands and Luxembourg, from #1247
• + CY.2 Alias of B.1.1.529.5.2.7.2 found in Japan, from #1474
• + BA.5.2.13 Alias of B.1.1.529.5.2.13, mainly found in England, from #959
• + BA.5.2.14 Alias of B.1.1.529.5.2.14, mainly found in Denmark, Canada and Pakistan, from #1002
• + BA.5.2.16 Alias of B.1.1.529.5.2.16, Indonesia lineage, defined by ORF1a:A3697V, indirectly, from #1065
• + BU.1 Alias of B.1.1.529.5.2.16.1, defined by S:444M and S:460K, from #1065
• + BA.5.2.18 Alias of B.1.1.529.5.2.18, mainly Scandinavia, defined by S:K444R on ORF1b:1050N branch, from #1025
• + CR.1.3 Alias of B.1.1.529.5.2.18.1.3, found mainly in Denmark and Japan, from #1355
• + BA.5.2.19 Alias of B.1.1.529.5.2.19, mainly Scandinavia, defined by ORF3a:T14I on ORF1b:1050N branch, from #916
• + BV.1 Alias of B.1.1.529.5.2.20.1, mainly found in Denmark, formerly BA.5.2.17, from #1019
• + CN.1 Alias of B.1.1.529.5.2.21.1, S:N450D, from #1108
• + BA.5.2.22 Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from #945
• + BA.5.2.23 Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from #1090
• + CK.1 Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, from #1120
• + CK.1.1 Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from #1452
• + CK.1.1.2 Alias of B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, from #2271
• + CK.1.2 Alias of B.1.1.529.5.2.24.1.2, Pakistan, S:G181V, S:R346T, from #1467
• + CK.3 Alias of B.1.1.529.5.2.24.3, found mainly in Singapore and USA, from #1121
• + BA.5.2.25 Alias of B.1.1.529.5.2.25, mainly found in France, USA and Canada, from #1111
• + DB.3 Alias of B.1.1.529.5.2.25.3 found mainly in Europe, from #1613
• + BA.5.2.26 Alias of B.1.1.529.5.2.26, most common in Thailand, defined by ORF3a:L108V, from #1133
• + BA.5.2.27 Alias of B.1.1.529.5.2.27, most common in Vietnam, defined by ORF1a:I2332V, from #1133
• + CF.1 Alias of B.1.1.529.5.2.27.1, USA and Mexico lineage, defined by S:K97T, originally designated as BA.5.2.15, from #1054
• + CG.1 Alias of B.1.1.529.5.2.26.1, mainly found in Germany, Poland and Denmark, from #1126
• + BA.5.2.28 Alias of B.1.1.529.5.2.28, most common in Malaysia, defined by ORF1a:T1437I, from #1133
• + BA.5.2.29 Alias of B.1.1.529.5.2.29, mainly found in Denmark, from #1050
• + BA.5.2.31 Alias of B.1.1.529.5.2.31, USA lineage, defined by S:L84I
• + CD.1 Alias of B.1.1.529.5.2.31.1, USA lineage, defined by S:G446D, S:A688T
• + CD.2 Alias of B.1.1.529.5.2.31.2, USA lineage, defined by S:A435S
• + BA.5.2.34 Alias of B.1.1.529.5.2.34, mainly found in Israel and USA, from #992
• + BA.5.2.37 Alias of B.1.1.529.5.2.37, found mainly in USA and India, from #1117
• + BA.5.2.41 Alias of B.1.1.529.5.2.41, found mainly in Sweden, from #1328
• + BA.5.2.42 Alias of B.1.1.529.5.2.42, found mainly in Australia, from #1266
• + BA.5.2.43 Alias of B.1.1.529.5.2.43, found mainly in SouthKorea, from #1312
• + BA.5.2.45 Alias of B.1.1.529.5.2.45, found mainly in Australia, from #1383
• + BA.5.2.46 Alias of B.1.1.529.5.2.46 found mainly in Japan, from #1446
• + BA.5.2.47 Alias of B.1.1.529.5.2.47 found mainly in Indonesia, Australia, and USA, from #1496
• + DQ.1 Alias of B.1.1.529.5.2.47.1 found mainly in Indonesia, Germany, and USA, from #1496
• + BA.5.2.48 Alias of B.1.1.529.5.2.48, China, C2710T, C8626T, T17208C, from #1471
• + DY.1.1 Alias of B.1.1.529.5.2.48.1.1 found mainly in China, from #1599
• + BA.5.2.50 Alias of B.1.1.529.5.2.50 China, ORF1a:S2488F after ORF1b:P1727L, from #1542
• + BA.5.2.63 Alias of B.1.1.529.5.2.63 found mainly in Canada, from #1636
• + BA.5.3 Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from #550
• + BA.5.3.1 Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from #625
• + BE.1 Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from #625
• + BE.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1, found globally, from #931
• + BQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from #993
• + BQ.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from #993
• + BQ.1.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2, England, S:D253G, from #1209
• + DU.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2.1 found mainly in UK, from #1540
• + DR.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, S:M153I, found mainly in USA, from #1420
• + DN.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1 found mainly in UK and Denmark, from #1463
• + BQ.1.1.12 Alias of B.1.1.529.5.3.1.1.1.1.1.1.12, France/USA, S:S494P, on ORF1a:T4368I branch
• + DM.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.15.1, Spain/Europe/USA, S:A348S
• + ER.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1 found mainly in UK, from #1492
• + ER.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from #1715
• + BQ.1.1.25 Alias of B.1.1.529.5.3.1.1.1.1.1.1.25, USA/Canada, S:F490S and S:Y144-, from #1350
• + BQ.1.1.32 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from #1402
• + DT.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.1 England, S:F494P, from #1484
• + DT.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.2 found mainly in USA, from #1612
• + BQ.1.1.34 Alias of B.1.1.529.5.3.1.1.1.1.1.1.34, England, S:144-, S:494P, from #1483
• + ET.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, from #1732
• + BQ.1.1.38 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38 found mainly in South Africa and USA, from #1419
• + BQ.1.1.39 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39 found mainly in England, Singapore and Canada, from #1385
• + FQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39.1, found mainly in Sweden, France and Australia, from #1797
• + BQ.1.1.41 Alias of B.1.1.529.5.3.1.1.1.1.1.1.41 USA, defined by S:K182I, from #1291
• + BQ.1.1.45 Alias of B.1.1.529.5.3.1.1.1.1.1.1.45 Europe, S:Y248D, from #1512
• + BQ.1.1.50 Alias of B.1.1.529.5.3.1.1.1.1.1.1.50 found mainly in Peru, from #1577
• + EA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.52.1 ORF8:C102F/ins_S:247:SKWL, from #1635
• + BQ.1.1.60 Alias of B.1.1.529.5.3.1.1.1.1.1.1.60 Brazil, S:S691F, from #1426
• + ES.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.65.1 found mainly in Canada and USA, from #1722
• + BQ.1.1.71 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from #1713
• + BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from #1740
• + BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from #1817
• + BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from #1082
• + BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1, found mainly in Japan, SouthKorea and Mongolia, from #1392
• + BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650
• + BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082
• + BQ.1.6 Alias of B.1.1.529.5.3.1.1.1.1.1.6, USA lineage, defined by ORF1a:G94C
• + BQ.1.8 Alias of B.1.1.529.5.3.1.1.1.1.1.8, defined by ORF1a:S505F and S:Y144-, from #1202
• + FF.1 Alias of B.1.1.529.5.3.1.1.1.1.1.8.2.1 found mainly in the UK, from #1523
• + BQ.1.9 Alias of B.1.1.529.5.3.1.1.1.1.1.9, USA lineage, defined by ORF1a:V2604I followed by S:346T (independent from BQ.1.1)
• + BQ.1.10.1 Alias of B.1.1.529.5.3.1.1.1.1.1.10.1, Italy/England/Denmark, S:H146L, from #1189
• + BQ.1.11.1 Alias of B.1.1.529.5.3.1.1.1.1.1.11.1 found mainly in USA and Peru, from #1581
• + BQ.1.13.1 Alias of B.1.1.529.5.3.1.1.1.1.1.13.1 found mainly in USA and Europe, from #1400
• + BQ.1.24 Alias of B.1.1.529.5.3.1.1.1.1.1.24, South Africa, S:T240I, S:R346T, from #1240
• + BQ.1.25.1 Alias of B.1.1.529.5.3.1.1.1.1.1.25.1, found mainly in USA, from #1451
• + BQ.1.26 Alias of B.1.1.529.5.3.1.1.1.1.1.26, found mainly in Denmark, from #1315
• + BQ.1.26.1 Alias of B.1.1.529.5.3.1.1.1.1.1.26.1, found mainly in Denmark, from #1369
• + BQ.1.28 Alias of B.1.1.529.5.3.1.1.1.1.1.28, found mainly in USA, ins:S:247SWRM, from #1415
• + BQ.1.32 Alias of B.1.1.529.5.3.1.1.1.1.1.32 found mainly in USA and Mexico, from #1731
• + BE.1.2 Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from #923
• + BE.1.2.1 Alias of B.1.1.529.5.3.1.1.2.1, Panama, Canada, USA, defined by S:V445A, from #1095
• + DW.1 Alias of B.1.1.529.5.3.1.1.2.1.1 found mainly in Costa Rica, from #1564
• + BE.4 Alias of B.1.1.529.5.3.1.4, Bangladesh, defined by ORF1a:T3308N, from #1115
• + BE.4.1 Alias of B.1.1.529.5.3.1.4.1, Bangladesh, defined by S:P209L, S:R346T, from #1115
• + BE.4.1.1 Alias of B.1.1.529.5.3.1.4.1.1, Bangladesh, defined by S:K444R, from #1115
• + CQ.2 Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/USA, defined by S:V445A, from #1232
• + BE.4.2 Alias of B.1.1.529.5.3.1.4.2, Bangladesh, defined by S:K444N & S:N460K, from #1114
• + BE.5 Alias of B.1.1.529.5.3.1.5, South Africa, S:R346T, from #1281
• + BE.7 Alias of B.1.1.529.5.3.1.7, South Africa, S:R346T on 28693C, 22624C, from #1280
• + BE.8 Alias of B.1.1.529.5.3.1.8, South Africa, S:R346T on 28693C, from #1278
• + BE.9 Alias of B.1.1.529.5.3.1.9, S:144-, S:444T, S:460K, on 28693C, Brazil, from #1302
• + BE.10 Alias of B.1.1.529.5.3.1.10, S:K444T, S:N460K, mainly Brazil, from #1411
• + BA.5.3.2 Alias of B.1.1.529.5.3.2, mainly found in Germany, from #697
• + BA.5.3.5 Alias of B.1.1.529.5.3.5, mainly found in South Africa, from #1042
• + BA.5.5 Alias of B.1.1.529.5.5, mainly found in USA, from #656
• + BA.5.5.1 Alias of B.1.1.529.5.5.1, mainly found in USA, from #873
• + BA.5.5.2 Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from #938
• + BA.5.5.3 Alias of B.1.1.529.5.5.3, USA lineage, from #1015
• + BA.5.6.2 Alias of B.1.1.529.5.6.2, mainly found in USA, Belgium and Mexico, from #903
• + BW.1 Alias of B.1.1.529.5.6.2.1, Mexico lineage, defined by S:460K, from #1059
• + BW.1.1 Alias of B.1.1.529.5.6.2.1.1, Mexico lineage, defined by S:V486A, from #1341
• + BA.5.6.3 Alias of B.1.1.529.5.6.3, mainly found in England, from #1118
• + BA.5.6.4 Alias of B.1.1.529.5.6.4, found in USA and Europe, from #1191
• + BA.5.8 Alias of B.1.1.529.5.8, mainly found in England, USA, Denmark and Scotland, from #743
• + BA.5.9 Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from #753
• + BA.5.10 Alias of B.1.1.529.5.10, mainly found in Philippines, Canada, and USA, from #936
• + BA.5.10.1 Alias of B.1.1.529.5.10.1, mainly from Philippines, defined by S:346T, from #1031
• + DF.1 Alias of B.1.1.529.5.10.1.1, found mainly in UK, from #1270
• + DF.1.1 Alias of B.1.1.529.5.10.1.1.1 found mainly in USA, from #1494
• + BA.5.11 Alias of B.1.1.529.5.11, South Africa, C1627T, S:R346T, from #1277
• + BA.5.12 Alias of B.1.1.529.5.12 found mainly in Switzerland, France and Germany, from #1640
• + B.1.36.31 UK/Global
• + B.1.36.36 Canada
• + B.1.110 Chilean/ USA and Australia lineage
• + B.1.110.1 Chilean/ USA lineage
• + B.1.147 Canadian lineage
• + B.1.177.23 Swiss lineage
• + B.1.177.28 Swiss lineage
• + B.1.177.30 England
• + B.1.177.31 Swiss lineage
• + W.1 Alias of B.1.177.53.1, French and USA lineage
• + B.1.177.71 Swiss lineage
• + B.1.177.88 Italian lineage, from #19
• + B.1.243.1 Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf, from #35
• + B.1.243.2 Mexico lineage, from #169
• + B.1.270 Canadian lineage
• + B.1.279 Canadian lineage
• + B.1.294 USA - WI and MN
• + B.1.351.5 Sublineage of B.1.351 in Spain, from #211
• + B.1.375 USA lineage (circulating in Connecticut with the 69-70del, which leads to SGTF. However, they express 484E and 501N in their spike proteins.)
• + B.1.400.1 USA lineage, from #94
• + B.1.415.1 Predominantly Mexico lineage, from #157
• + B.1.429.1 Colorado lineage, from #37
• + B.1.459 Indonesia
• + B.1.463 Finland
• + B.1.466.1 USA/UAE
• + B.1.467 Nigeria/Switzerland
• + B.1.490 Finland.
• + B.1.575 USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I"
• + B.1.575.1 Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I", from #64
• + B.1.575.2 Spain lineage, from #116
• + B.1.589 USA lineage
• + B.1.590 USA lineage
• + B.1.591 USA lineage
• + B.1.592 Canadian lineage
• + B.1.595.2 USA (AZ)
• + B.1.616 France lineage, from #31
• + B.1.617 Predominantly India lineage with several spike mutations, from #38
• + B.1.617.1 Predominantly India lineage with 484Q, from #49
• + B.1.617.2 Predominantly India lineage with several spike mutations, from #49
• + AY.1 Alias of B.1.617.2.1, in several European countries, from #95
• + AY.2 Alias of B.1.617.2.2, in USA with K417N, from #107
• + AY.3 Alias of B.1.617.2.3, USA lineage, from #121
• + AY.3.1 Alias of B.1.617.2.3.1, USA lineage, from #147
• + AY.3.2 Alias of B.1.617.2.3.2, Peru lineage, from #312
• + AY.3.3 Alias of B.1.617.2.3.3, USA lineage, from #365
• + AY.4 Alias of B.1.617.2.4, UK lineage, from #180
• + AY.4.1 Alias of B.1.617.2.4.1, UK lineage, from #214
• + AY.4.2 Alias of B.1.617.2.4.2, predominantly UK lineage, from #223
• + AY.4.2.1 Alias of B.1.617.2.4.2.1, predominantly UK lineage, from #248
• + AY.4.2.2 Alias of B.1.617.2.4.2.2, UK lineage, from #249
• + AY.4.2.3 Alias of B.1.617.2.4.2.3, European lineage, from #356
• + AY.4.2.5 Alias of B.1.617.2.4.2.5, UK lineage, from #543
• + AY.4.3 Alias of B.1.617.2.4.3, lineage in several countries, from #222
• + AY.4.4 Alias of B.1.617.2.4.4, lineage in several European countries, from #237
• + AY.4.5 Alias of B.1.617.2.4.5, predominantly Lithuania lineage, from #241
• + AY.4.6 Alias of B.1.617.2.4.6, European lineage, from #264
• + AY.4.7 Alias of B.1.617.2.4.7, lineage in Aruba and other countries, from #291
• + AY.4.8 Alias of B.1.617.2.4.8, UK lineage, from #304
• + AY.4.9 Alias of B.1.617.2.4.9, European lineage, from #332
• + AY.4.10 Alias of B.1.617.2.4.10, European lineage, from #332
• + AY.5 Alias of B.1.617.2.5, UK lineage, from #180
• + AY.5.7 Alias of B.1.617.2.5.7, mainly found in Israel, from #387
• + AY.6 Alias of B.1.617.2.6, UK lineage, from #180
• + AY.7 Alias of B.1.617.2.7, UK lineage, from #180
• + AY.8 Alias of B.1.617.2.8, UK lineage, from #180
• + AY.9 Alias of B.1.617.2.9, UK lineage, from #180
• + AY.9.2.2 Alias of B.1.617.2.9.2.2, Sweden lineage, from #284
• + AY.10 Alias of B.1.617.2.10, UK lineage, from #180
• + AY.11 Alias of B.1.617.2.11, UK lineage, from #142
• + AY.23 Alias of B.1.617.2.23, predominantly Singapore and Indonesia lineage, from #175
• + AY.23.1 Alias of B.1.617.2.23.1, Singapore lineage, from #237
• + AY.23.2 Alias of B.1.617.2.23.2, European lineage, from #265
• + AY.24 Alias of B.1.617.2.24, predominantly Indonesia lineage, from #175
• + AY.25 Alias of B.1.617.2.25, USA lineage, from #181
• + AY.25.1 Alias of B.1.617.2.25.1, Canada and USA lineage, from #313
• + AY.25.1.1 Alias of B.1.617.2.25.1.1, Peru lineage, from #355
• + AY.26 Alias of B.1.617.2.26, USA and Mexico lineage, from #188
• + AY.26.1 Alias of B.1.617.2.26.1, Peru lineage, from #278
• + AY.27 Alias of B.1.617.2.27, Canada lineage, from #196
• + AY.28 Alias of B.1.617.2.28, Sri Lanka lineage, from #199
• + AY.29 Alias of B.1.617.2.29, Japan lineage, from #208
• + AY.29.1 Alias of B.1.617.2.29.1, Japan lineage, from #224
• + AY.29.2 Alias of B.1.617.2.29.2, Japan lineage, from #381
• + AY.30 Alias of B.1.617.2.30, Thailand and Cambodia lineage, from #207
• + AY.31 Alias of B.1.617.2.31, lineage associated with Myanmar. At the time of designation, almost all sequences in this lineage were from Myanmar or had travel history from Myanmar, from #206
• + AY.32 Alias of B.1.617.2.32, South Africa lineage, from #209
• + AY.33 Alias of B.1.617.2.33, Lineage circulating mostly in Belgium, Denmark, France, Netherlands, Germany, from #215 and #219
• + AY.33.1 Alias of B.1.617.2.33.1, Reunion and France lineage, from #370
• + AY.33.2 Alias of B.1.617.2.33.2, mainly found in Germany, Poland, Gibraltar and Spain, from #403
• + AY.34 Alias of B.1.617.2.34, lineage with spike Q677H circulating in multiple countries, from #217
• + AY.34.1 Alias of B.1.617.2.34.1, lineage in multiple countries including Gambia, Senegal, Benin and Mali, from #255
• + AY.34.2 Alias of B.1.617.2.34.2, lineage in multiple countries including Martinique, from #269
• + AY.35 Alias of B.1.617.2.35, lineage with spike E484Q circulating in USA, from #217
• + AY.36 Alias of B.1.617.2.36, lineage predominantly in Nigeria, UK and USA, from #225
• + AY.36.1 Alias of B.1.617.2.36.1, lineage in Germany and other countries, from #434
• + AY.37 Alias of B.1.617.2.37, lineage predominantly in Liberia, USA and France, from #228
• + AY.38 Alias of B.1.617.2.38, lineage predominantly in South Africa, from #229
• + AY.39 Alias of B.1.617.2.39, predominantly USA lineage, from #234
• + AY.39.1 Alias of B.1.617.2.39.1, Australia and USA lineage, from #234
• + AY.39.1.1 Alias of B.1.617.2.39.1.1, predominantly New Zealand lineage, from #234
• + AY.39.1.2 Alias of B.1.617.2.39.1.2, Australia lineage, from #307
• + AY.39.1.3 Alias of B.1.617.2.39.1.3, Australia lineage, from #339
• + AY.39.1.4 Alias of B.1.617.2.39.1.4, Australian lineage, from #438
• + AY.39.2 Alias of B.1.617.2.39.2, Peru lineage, from #295
• + AY.40 Alias of B.1.617.2.40, Reunion lineage, from #237
• + AY.41 Alias of B.1.617.2.41, European lineage, from #237
• + AY.42 Alias of B.1.617.2.42, European lineage, from #239
• + AY.42.1 Alias of B.1.617.2.42.1, lineage in Bonaire, Curacao and other countries, from #331
• + AY.43 Alias of B.1.617.2.43, European lineage, from #240
• + AY.43.1 Alias of B.1.617.2.43.1, Brazil lineage, from #319
• + AY.43.2 Alias of B.1.617.2.43.2, Brazil lineage, from #319
• + AY.43.3 Alias of B.1.617.2.43.3, Chile lineage, from #337
• + AY.43.4 Alias of B.1.617.2.43.4, Switzerland lineage, from #317
• + AY.43.5 Alias of B.1.617.2.43.5, Portugal lineage, from #335
• + AY.43.6 Alias of B.1.617.2.43.6, Denmark lineage, from #315
• + AY.43.7 Alias of B.1.617.2.43.7, Brazil lineage, from #378
• + AY.44 Alias of B.1.617.2.44, USA lineage, from #242
• + AY.45 Alias of B.1.617.2.45, South Africa lineage, from #246
• + AY.46 Alias of B.1.617.2.46, Africa lineage, from #247
• + AY.46.1 Alias of B.1.617.2.46.1, USA lineage, from #247
• + AY.46.2 Alias of B.1.617.2.46.2, Germany and Turkey lineage, from #247
• + AY.46.3 Alias of B.1.617.2.46.3, Brazil lineage, from #247
• + AY.46.4 Alias of B.1.617.2.46.4, USA lineage, from #247
• + AY.46.5 Alias of B.1.617.2.46.5, UK lineage, from #247
• + AY.46.6 Alias of B.1.617.2.46.6, European lineage, from #247
• + AY.46.6.1 Alias of B.1.617.2.46.6.1, Italy lineage, from #369
• + AY.47 Alias of B.1.617.2.47, USA lineage, from #254
• + AY.98.1.1 Alias of B.1.617.2.98.1.1, mainly found in Germany and Denmark, from #604
• + AY.102 Alias of B.1.617.2.102, Peru and Chile lineage, from #272
• + AY.102.1 Alias of B.1.617.2.102.1, Peru lineage, from #325
• + AY.102.2 Alias of B.1.617.2.102.2, Peru lineage, from #330
• + AY.112 Alias of B.1.617.2.112, lineage in India and other countries, from #283
• + AY.112.2 Alias of B.1.617.2.112.2, mainly found in India, from #385
• + AY.112.3 Alias of B.1.617.2.112.3, mainly found in Israel, from #388
• + AY.119.1 Alias of B.1.617.2.119.1, Chile and Peru lineage, from #336
• + AY.119.2 Alias of B.1.617.2.119.2, USA lineage, from #288
• + AY.122.1 Alias of B.1.617.2.122.1, Israel lineage, formally AY.12 but renamed as descends from AY.122 which was designated after AY.12, from #170
• + AY.122.2 Alias of B.1.617.2.122.2, Finland and Estonia lineage, from #273
• + AY.122.3 Alias of B.1.617.2.122.3, Denmark and Sweden lineage, from #371
• + AY.122.6 Alias of B.1.617.2.122.6, mainly found in France, from #394
• + AY.123.1 Alias of B.1.617.2.123.1, Belgium lineage, from #354
• + AY.124.1 Alias of B.1.617.2.124.1, lineage in Portugal and other European countries, from #345
• + AY.125 Alias of B.1.617.2.125, European lineage, from #328
• + AY.126 Alias of B.1.617.2.126, European lineage, from #253
• + AY.127 Alias of B.1.617.2.127, lineage in India and other countries, from #342
• + AY.127.1 Alias of B.1.617.2.127.1, lineage in Djibouti and other countries, from #352
• + AY.127.3 Alias of B.1.617.2.127.3, Qatar lineage, from #525
• + AY.128 Alias of B.1.617.2.128, lineage in Estonia, Georgia and other countries, from #309
• + AY.129 Alias of B.1.617.2.129, European lineage, from #329
• + AY.130 Alias of B.1.617.2.130, Bahrain lineage, from #351
• + AY.131 Alias of B.1.617.2.131, mainly reported from Bangladesh, from #373
• + AY.132 Alias of B.1.617.2.132, Denmark lineage, from #379
• + AY.133 Alias of B.1.617.2.133, France Germany and UK lineage (with some samples from elsewhere, notably Senegal and Ghana), from #380
• + AY.134 Alias of B.1.617.2.134, European lineage, previously assigned AY.39.4, from #406
• + B.1.617.3 Predominantly India lineage with 484Q, from #49
• + B.1.618 India lineage in West Bengal, from #46
• + B.1.619 Lineage in multiple countries, potentially originated in Cameroon and introduced into Europe, from #44
• + B.1.619.1 South Korea lineage, from #160
• + B.1.620 Lineage in multiple countries, potentially originated in Cameroon and spread within Europe post-introduction, from #54
• + B.1.621 Lineage predominantly in Colombia with several spike mutations, from #57
• + B.1.621.1 Lineage in multiple countries, from #115
• + BB.2 Alias of B.1.621.1.2, from #232
• + B.1.621.2 Lineage in multiple countries, from #232
• + B.1.622 Reunion lineage, from #58
• + B.1.623 Predominantly USA lineage with mutations of interest, from #25
• + B.1.625 Predominantly Colombia and USA lineage, from #93
• + B.1.626 Europe and USA lineage, from #118
• + B.1.627 USA, Mexico and Honduras lineage, from #130
• + B.1.629 Lineage circulating in several countries, from #132
• + B.1.630 Lineage in several countries, from #137
• + B.1.631 USA and Mexico lineage, from #146
• + B.1.632 Predominantly Mexico lineage, from #156
• + B.1.633 India lineage, from #155
• + B.1.634 Mexico and USA lineage, from #159
• + B.1.635 Mexico and USA lineage, from #159
• + B.1.636 USA, Mexico and Honduras lineage, from #173
• + B.1.637 Added as B.1.526.1 15 Mar 2021, but turned out not to be a descendant of B.1.526; was folded into B.1.526 from 14 Jun - 18 Aug 2021; now a separate lineage to leave B.1.526 more congruent with Iota (Nextstrain 21F / original B.1.526), from #154
• + B.1.637.1 USA lineage, from #353
• + B.1.638 South Africa lineage, from #205
• + B.1.639 Lineage sequenced in USA, potentially associated with Puerto Rico, from #161
• + B.1.640 Lineage in Africa and Europe, from #297
• + B.1.640.1 Lineage in Africa and Europe, from #362
• + B.1.640.2 Lineage, from #362
• + B.1.641 Lineage in white-tailed deer, from #453
• + B.1.9.4 European wide lineage with active cases with activity in Switzerland
• + B.4.8 Cryptic lineage in Iran? Occasional international appearances, most recently Nov 2020
• + B.6.8 Papua New Guinea
• + XB Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, Formally B.1.628, from #189
• + XC Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from #263
• + XD Recombinant lineage of Delta and BA.1, France and Denmark lineage, from #444
• + XE Recombinant lineage of BA.1 and BA.2, UK lineage, from #454
• + XF Recombinant lineage of Delta and BA.1, UK lineage, from #445
• + XG Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #447
• + XH Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #448
• + XJ Recombinant lineage of BA.1 and BA.2, Finland lineage, from #449
• + XK Recombinant lineage of BA.1 and BA.2, Belgium lineage, from #460
• + XL Recombinant lineage of BA.1 and BA.2, UK lineage, from #464
• + XM Recombinant lineage of BA.1.1 and BA.2, European lineage, from #472
• + XN Recombinant lineage of BA.1 and BA.2, UK lineage, from #480
• + XP Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #481
• + XQ Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #468
• + XR Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #469
• + XS Recombinant lineage of Delta and BA.1.1, USA lineage, from #471
• + XT Recombinant lineage of BA.1 and BA.2, South Africa lineage, from #478
• + XU Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from #522
• + XV Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from #463
• + XW Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from #591
• + XY Recombinant lineage of BA.1 and BA.2, predominantly in USA, from #606
• + XZ Recombinant lineage of BA.2 and BA.1, USA lineage, from #636
• + XAA Recombinant lineage of BA.1 and BA.2, USA lineage, from #664
• + XAB Recombinant lineage of BA.1 and BA.2, Germany lineage, from #665
• + XAC Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from #590
• + XAD Recombinant lineage of BA.2 and BA.1, Germany lineage, from #607
• + XAE Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from #637
• + XAF Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from #676
• + XAG Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from #709
• + XAH Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from #755
• + XAJ Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from #826
• + XAK Recombinant lineage of BA.1 and BA.2, Germany lineage, from #823
• + XAL Recombinant lineage of BA.1 and BA.2, Germany lineage, from #757
• + XAM Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from #759
• + XAN Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from #771
• + XAP Recombinant lineage of BA.2 and BA.1, USA lineage, from #789
• + XAQ Recombinant lineage of BA.1 and BA.2, lineage mainly found in Canada, from #798
• + XAR Recombinant lineage of BA.1 and BA.2, Reunion lineage, from #860
• + XAS Recombinant lineage of BA.5 and BA.2, USA lineage, from #882
• + XAT Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from #885
• + XAU Recombinant lineage of BA.1.1 and BA.2.9, predominantly in Spain, England and France, from #894
• + XAV Recombinant lineage of BA.2 and BA.5, mainly France, USA, and Scotland lineage, from #911
• + XAW Recombinant lineage of BA.2* and AY.122, Russia lineage, from #895
• + XAY Recombinant lineage of BA.2 and AY.45, South Africa lineage, from #844
• + XAY.1 South Africa/USA lineage with 4 AA substitutions including S:D253G, from #1208
• + XAY.1.1 South Africa with S:R346T and ORF1a:K2108N, from #1255
• + XAY.1.1.1 Europe, S:D1153Y, from #1569
• + GL.1 Alias of XAY.1.1.1.1, Europe, S:D420N, C19441T, from #2032
• + XAZ Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from #797
• + XBA Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2, from #844
• + XBB Recombinant lineage of BJ.1 and BM.1.1.1 with breakpoint in S1, found in USA and Singapore, from #1058
• + XBB.1 Mostly Bangladesh and Singapore, defined by S:G252V, from #1088
• + XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from #1352
• + XBB.1.5.7 USA, ORF1b:V248F
• + XBB.1.5.10 S:F456L (T22928C), USA-NC, from #1614
• + EK.1 Alias of XBB.1.5.13.1, S:K417S, Austria, from #1638
• + HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from sars-cov-2-variants/lineage-proposals#59
• + FT.1 Alias of XBB.1.5.39.1, S:I197V, Canada, from #1745
• + XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africa, from #1804
• + HP.1 Alias of XBB.1.5.55.1, N:L13F, USA/Mexico, from sars-cov-2-variants/lineage-proposals#277
• + XBB.1.5.57 A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, from #1973
• + GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil, from #2093
• + GK.2.1.1 Alias of XBB.1.5.70.2.1.1, S:P1162S, from sars-cov-2-variants/lineage-proposals#716
• + GK.3.2 Alias of XBB.1.5.70.3.2, S:T572I, USA, from #2272
• + GK.8 Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil
• + HD.1 Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic, from sars-cov-2-variants/lineage-proposals#363
• + HY.1 Alias of XBB.1.5.100.1, S:478R, USA/Mexico, from sars-cov-2-variants/lineage-proposals#453
• + XBB.1.6 USA, S:L216F, S:H146K, from #1428
• + FL.1.4 Alias of XBB.1.9.1.1.4, S:478R, S:Q1208H, Vietnam, from #1985
• + HN.2 Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S
• + HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R
• + HN.3 Alias of XBB.1.9.1.1.5.1.3, S:S494P
• + HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G
• + HN.4 Alias of XBB.1.9.1.1.5.1.4, ORF1a:T403I
• + HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K
• + HN.6 Alias of XBB.1.9.1.1.5.1.6, ORF1a:D1933A
• + FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E, from sars-cov-2-variants/lineage-proposals#342
• + FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K
• + FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V, from #2030
• + XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore, from #1602
• + EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China, from sars-cov-2-variants/lineage-proposals#46
• + EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from #2020
• + HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China, from sars-cov-2-variants/lineage-proposals#359
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China, from sars-cov-2-variants/lineage-proposals#414
• + EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222
• + EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia, from sars-cov-2-variants/lineage-proposals#523
• + EG.14 Alias of XBB.1.9.2.14, Orf1b:K1383R, from #2274
• + XBB.1.11 Indonesia/Malaysia/Singapore/USA, C13968A and G16377A, from #1490
• + XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P, from #1490
• + XBB.1.12.1 S:Q613H, S:E1202Q, Argentina/Chile/Spain, from sars-cov-2-variants/lineage-proposals#336
• + XBB.1.13 S:S490P, from #1487
• + XBB.1.16 Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, from #1723
• + GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from sars-cov-2-variants/lineage-proposals#345
• + GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I, from sars-cov-2-variants/lineage-proposals#308
• + HF.1 Alias of XBB.1.16.13.1, S:K304N, South Korea/Japan, from #2083
• + HF.1.1 Alias of XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada, from sars-cov-2-variants/lineage-proposals#521
• + HF.1.2 Alias of XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA
• + XBB.1.16.16 S:Q613H, S:S412N, India-GJ/USA/Pakistan, from sars-cov-2-variants/lineage-proposals#54
• + XBB.1.16.17 S:E554K, mainly in NZ, from sars-cov-2-variants/lineage-proposals#354
• + XBB.1.17 Defined by T27995C and ORF1a:L469F, from #1712
• + XBB.1.17.1 Defined by S:215H, S:S486P, from #1712
• + GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria, from sars-cov-2-variants/lineage-proposals#265
• + GA.4.1.3 Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I
• + XBB.1.17.2 Defined by ORF1a:A698S, Russia, from #1712
• + XBB.1.19.1 Defined by S:E554K, Pakistan, from #1765
• + FY.1.4 Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA
• + FY.1.4.1 Alias of XBB.1.22.1.1.4.1, S:I569T, S:N185S, USA
• + FY.3.1 Alias of XBB.1.22.1.3.1, S:I210T, China, from #2009
• + FY.4.1 Alias of XBB.1.22.1.4.1, S:S494P, Kenya, from #1979
• + FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from sars-cov-2-variants/lineage-proposals#302
• + FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I
• + FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N
• + FY.6 Alias of XBB.1.22.1.6, ORF1a:A591V
• + FY.6.1 Alias of XBB.1.22.1.6.1, S:S939F, Japan
• + FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan
• + FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from sars-cov-2-variants/lineage-proposals#257
• + FY.8 Alias of XBB.1.22.1.8, S:T572I
• + FY.9 Alias of XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia from #2053
• + HU.1.1 Alias of XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA, from #2136
• + XBB.1.24 Defined by S:F486P, on T13704C branch, South East Asia, from #1654
• + XBB.1.27 Defined by S:478R, S:A890V, Mexico/USA/India, from #1654
• + XBB.1.33 Defined by S:A376Trev, on ORF1b:L1061I, A27965G, pre ORF8:8* branch, found mainly in Italy, from #1879
• + XBB.1.34 S:486P, S:681R, N:A50V, Uganda/Sudan, from #1621
• + HB.1 Alias of XBB.1.34.2.1, S:F456L (22928C), USA/China/Canada, from sars-cov-2-variants/lineage-proposals#217
• + XBB.1.36 Defined by S:S490P, found mainly in Malaysia, Indonesia and Singapore, from #1781
• + XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997
• + XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China, from #1954
• + XBB.1.42.1 S:478R, from sars-cov-2-variants/lineage-proposals#198
• + HL.1 Alias of XBB.1.42.2.1, S:E583D, from sars-cov-2-variants/lineage-proposals#352
• + XBB.1.49 S:346S, S:486P, on ORF1b:L1061I, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia, from sars-cov-2-variants/lineage-proposals#208
• + XBB.2 Defined by S:D253G, from #1173
• + XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA, from #1603 and #1535
• + XBB.2.3.1 S:D80Y, England/Sweden/India, from #1775
• + HH.1.1 Alias of XBB.2.3.2.1.1, S:G181A, from sars-cov-2-variants/lineage-proposals#183
• + HH.7 Alias of XBB.2.3.2.7, ORF1a:T1788M, India from #1962
• + GJ.1 Alias of XBB.2.3.3.1, found mainly in China and USA, from #2005
• + JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/USA, from sars-cov-2-variants/lineage-proposals#597
• + GJ.1.2.2 Alias of XBB.2.3.3.1.2.2, S:478R, Europe/USA/Australia
• + GJ.4 Alias of XBB.2.3.3.4, S:M153I, from #1902
• + XBB.2.3.5 S:K478N, found mainly in USA and India, from #1846
• + XBB.2.3.8 C2013T, T16389C, S:478R, Singapore/SouthKorea, from #1866
• + JA.1 Alias of XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, from sars-cov-2-variants/lineage-proposals#240
• + JY.1.1 Alias of XBB.2.3.19.1.1, S:T1117K
• + XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany, from #1603 and #1518
• + XBB.2.7.1 S:Y453F, S:K478Q, Singapore, from #1725
• + XBB.2.9 Defined by ORF1a:V2027I and S:F486P, found mainly in Russia, from #1877
• + XBB.3.1 Defined by S:Q677R, India-TN/Singapore, from #1241
• + XBB.4 Defined by S:K444R on ORF1a:D82G branch, from #1239
• + XBC Recombinant lineage of BA.2 and B.1.617.2*, predominantly in Philippines, from #1100
• + XBC.1 Mostly Philippines, South Korea, USA, Singapore, defined by S:L452M, from #1130
• + XBC.1.4 Australia, S:G184S, from #1622
• + XBC.1.6 S:346S, S:M452R, found in Australia, from #1755
• + XBD Recombinant lineage of BA.2.75.2 and BF.5, India and world, from #1137
• + XBE Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from #1246
• + XBF Recombinant lineage of BA.5.2.3 and CJ.1, Australia, from #1259
• + XBF.5 Australia, C2455T
• + XBG Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from #896
• + XBH Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from #1229
• + XBJ Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from #1268
• + XBK Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from #1418
• + XBL Recombinant lineage of XBB.1.5.57-BA.2.75* (short segment from ~1k-~5k)-XBB.1.5.57, Malaysia, from #1532
• + XBM Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from #1441
• + XBN Recombinant lineage of BA.2.75 and XBB.3, mainly found in USA, from #1296
• + XBP Recombinant lineage of BA.2.75 and BQ.1, predominantly in England and Canada, from #1393
• + XBQ Recombinant lineage of BA.5.2 and CJ.1, defined by ORF1b:M454I, England and Canada, from #1440 and autolin
• + XBR Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, Canada, USA, from #1637
• + XBS Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, from #1567
• + XBT Recombinant lineage of BA.5.2.34, BA.2.75, BA.5.2.34, Germany, from #1576
• + XBU Recombinant lineage of BA.2.75.3, BQ.1, BA.2.75.3, from #1425
• + XBV Recombinant lineage of CR.1, XBB.1, from #1460
• + XBW Recombinant lineage of XBB.1.5, BQ.1.14, from #1505
• + XBY Recombinant lineage of BR.2.1, XBF, from #1669
• + XBZ Recombinant lineage of BA.5.2* and EF.1.3, predominantly in Denmark, Germany and Austria, from #1666
• + XCA Recombinant lineage of BA.2.75 and BQ.1, predominantly in UK, from #1752
• + XCB Recombinant lineage of BF.31.1 and BQ.1.10*, predominantly in Chile, from #1668
• + XCE Recombinant lineage of BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from sars-cov-2-variants/lineage-proposals#123
• + XCF Recombinant lineage of XBB* and FE.1 (XBB.1.18.1.1), possibly South America, from sars-cov-2-variants/lineage-proposals#2
• + XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from sars-cov-2-variants/lineage-proposals#609
• + XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England
• + XDA Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862
• + XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia
• + XDC Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902
• + *B.1.1.527 Withdrawn: Lineage in multiple countries, reassigned to C.38, from #150
• + *BA.2.3.3 Withdrawn: Does not have a reliable defining mutation, from #524
• + *BA.5.1.13 Withdrawn: Defined solely by Artic v3 artefacts, from #1029
• + *BA.5.2.15 Withdrawn: Redesignated as CF.1, being a child of BA.5.2.27, B.1.1.529.5.2.15, found in USA and Mexico, from #1054
• + *BQ.1.1.33 Withdrawn: Alias of B.1.1.529.5.3.1.1.1.1.1.1.33, USA lineage, child of BQ.1.1.3
• + *BA.5.4 Withdrawn: England, Denmark, Spain and Scotland. Sublineage of BA.5.2.1 (with G11837T (ORF1a:V3858L) (nsp6:V289L)),from #618
• + *B.1.351.4 Withdrawn: Potential contaminant lineage from mixture of B.1.351 and Delta, from #134. Sequences from Botswana, do not have E484K or N501Y but have L452R and T478K
• + *B.1.386 Withdrawn: Reassigned in the current tree. USA lineage
• + *AY.39.4 Withdrawn: Reassigned AY.134. Denmark lineage, from #406
• + *AY.89 Withdrawn: Merged into AY.4, from #398
• + *AY.96 Withdrawn: Based on discussion in, from #435
• + *B.1.624 Withdrawn: India lineage, from #91. Redesignated as B.1.1.526
• + *B.1.628 Withdrawn: Identified as a recombinant lineage and therefore renamed XB, from #189

2023-10-16

• + DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, on branch ORF1a:K3353R Spain, from sars-cov-2-variants/lineage-proposals#732
• + JV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France
• + JV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.2, S:V772I, France/Spain
• + DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R
• + DV.7.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.4, G28001T, on branch ORF1a:K3353R
• + DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135I, Spain
• + FD.5 Alias of XBB.1.5.15.5, ORF10:A8V, Peru
• + FD.5.1 Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru
• + GK.1.1.1 Alias of XBB.1.5.70.1.1.1, C28432T
• + GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil
• + GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia
• + GK.1.5 Alias of XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil
• + GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia
• + GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia
• + GK.1.7 Alias of XBB.1.5.70.1.7, S:F186L, T11695C, Europe
• + GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil
• + GK.1.9 Alias of XBB.1.5.70.1.9, C17010T, USA
• + GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil
• + GK.5.1 Alias of XBB.1.5.70.5.1, S:E180K
• + GK.6 Alias of XBB.1.5.70.6, S:N556K, S:E583A
• + GK.7 Alias of XBB.1.5.70.7, N:D3G
• + GK.8 Alias of XBB.1.5.70.8, ORF:E55Q, Brazil
• + GK.8.1 Alias of XBB.1.5.70.8.1, S:N185I, S:A475V
• + GK.9 Alias of XBB.1.5.70.9, S:T307S, Brazil
• + GK.10 Alias of XBB.1.5.70.10, S:E554G, Brazil
• + GK.11 Alias of XBB.1.5.70.11, S:T883I, Brazil
• + GK.12 Alias of XBB.1.5.70.12, S:T76I, S:N450D, Brazil
• + GN.1.2 Alias of XBB.1.5.73.1.2, S:Q321L
• + GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T)
• + KA.1 Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain
• + XBB.1.5.107 C24130T, Argentina/Uruguay/Bolivia
• + JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil
• + FL.13.2.1 Alias of XBB.1.9.1.13.2.1, S:D178H, South Korea
• + FL.13.4 Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan
• + FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484T
• + FL.13.5 Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina
• + FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines
• + FL.23.2.1 Alias of XBB.1.9.1.23.2.1, S:P521T, Philippines
• + FL.30.1 Alias of XBB.1.9.1.30.1, S:A852S, Greece
• + FL.35.1 Alias of XBB.1.9.1.35.1, S:478R, South Africa
• + HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore
• + HK.3.4 Alias of XBB.1.9.2.5.1.1.3.4, S:P809S
• + HK.3.5 Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore
• + HK.3.6 Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China
• + HK.3.7 Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China
• + HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T)
• + JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I
• + JG.4 Alias of XBB.1.9.2.5.1.3.4, C1684T, Europe
• + FU.1.1 Alias of XBB.1.16.1.1.1, S:K1266R
• + FU.1.1.1 Alias of XBB.1.16.1.1.1.1, S:N74S, USA
• + XBB.1.16.25 ORF1a:K510E, C16611T, A29221G
• + GA.7 Alias of XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire
• + GA.7.1 Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R
• + GA.7.2 Alias of XBB.1.17.1.7.2, S:H245Y
• + GA.8 Alias of XBB.1.17.1.8, C3619T, C27389T, Congo
• + GA.8.1 Alias of XBB.1.17.1.8.1, S:K182E, S:S494P, S:E554K, France/Belgium
• + GA.9 Alias of XBB.1.17.1.9, ORF3a:K67N,T7534C,C29719A
• + GA.10 Alias of XBB.1.17.1.10, ORF1a:V4520I
• + HE.2 Alias of XBB.1.18.1.1.1.1.2, S:H1058Y, USA
• + FE.1.1.5 Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil
• + XBB.1.41.1 S:478R, Africa, from sars-cov-2-variants/lineage-proposals#150
• + JC.2 Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece
• + JC.3 Alias of XBB.1.41.1.3, S:N703I, South Africa
• + JC.4 Alias of XBB.1.41.1.4, S:N148S
• + JC.5 Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y
• + JC.6 Alias of XBB.1.41.1.6, S:I1227V, South Africa
• + XBB.1.41.3 C17850T, C25276T, C29416G, Africa
• + JW.1 Alias of XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC
• + HH.2.1 Alias of XBB.2.3.2.2.1, S:K478R, England/France
• + HH.3 Alias of XBB.2.3.2.3, S:D1260Y, Japan
• + HH.4 Alias of XBB.2.3.2.4, S:A845S, India
• + HH.5 Alias of XBB.2.3.2.5, S:K147N, India
• + HH.6 Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India
• + HH.7 Alias of XBB.2.3.2.7, ORF1a:T1788M, India
• + HH.8 Alias of XBB.2.3.2.8, S:Q607R
• + HH.8.1 Alias of XBB.2.3.2.8.1, S:K478R
• + GJ.6 Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India
• + GJ.7 Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand
• + HG.1.1 Alias of XBB.2.3.8.1.1, S:A1190S, South Korea
• + HG.3 Alias of XBB.2.3.8.3, S:S255F, South Korea
• + GE.1.4 Alias of XBB.2.3.10.1.4, ORF1a:P3359S
• + GE.1.5 Alias of XBB.2.3.10.1.5, G6352A, C11653T, T16242A
• + GE.1.6 Alias of XBB.2.3.10.1.6, S:L118I
• + GS.4.1.1 Alias of XBB.2.3.11.4.1.1, S:P561S, France
• + GS.6 Alias of XBB.2.3.11.6, S:A845S, Wales
• + GS.7 Alias of XBB.2.3.11.7, ORF1a:L204I, C14925T
• + GS.7.1 Alias of XBB.2.3.11.7.1, S:E180Q, Tunisia
• + GS.8 Alias of XBB.2.3.11.8, ORF3a:I179V, Vietnam
• + JU.1 Alias of XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia
• + XBB.2.3.18 S:F456L (T22930A), S:N450D, S:1231A, India
• + XBB.2.3.19 S:G184V, ORF1a:P1786L, India
• + JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India
• + JY.1.1 Alias of XBB.2.3.19.1, S:T1117K
• + XBB.2.3.20 N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328
• + XBC.1.7.1 S:N185S, Philiippines
• + XBC.1.7.2 S:T299I, Australia
• + XCR Recombinant lineage of GK.1.1.1 and FU.1.1.1 (breakpoint between 23674-24372), USA, from #2323
• + XCS Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311
• + XCT Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811
• + XCU Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935
• + XCV Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210
• + XCW Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260
• + XCY Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887

2023-10-14

• + JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America，from #2284
• + BA.2.86.2 Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756
• + GL.2 Alias of XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong
• + GL.3 Alias of XAY.1.1.1.3, ORF1a:P1640S, Germany
• + JD.2.1 Alias of XBB.1.5.102.2.1, S:E554K, Brazil
• + GW.5.2 Alias of XBB.1.19.1.5.2, N:T379I
• + GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T
• + GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A
• + XBB.2.3.17 S:N450D, USA
• + HW.1.2 Alias of XBC.1.6.3.1.2, G15957A, Australia
• + HW.1.3 Alias of XBC.1.6.3.1.3, N:T391I, Australia
• + XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia
• + XBC.1.6.6 T8707C, C26735T, Australia
• + JT.1 Alias of XBC.1.6.6.1, S:V445A
• + XCR Recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323
• + *HK.1.1 Withdrawn as smaller than thought (only 6 sequences have 257V and G22927T): Alias of XBB.1.9.2.5.1.1.1.1, S:455F (G22927T), China

2023-10-13

• + JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America
• + JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe
• + BA.2.86.2 Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana
• + BA.2.86.3 Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa
• + JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa
• + GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY
• + HK.1.1 Alias of XBB.1.9.2.5.1.1.1.1, S:455F (G22927T), China
• + HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:455F (G22927C), S:T307I, China/New Zealand
• + HK.12 Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore
• + HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China
• + HK.13.1 Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G
• + HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H
• + HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China
• + HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch
• + HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L
• + HK.17 Alias of XBB.1.9.2.5.1.1.17, S:S494P, China
• + HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R
• + HK.19 Alias of XBB.1.9.2.5.1.1.19, S:F157L
• + HV.1.1 Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA
• + HV.1.2 Alias of XBB.1.9.2.5.1.6.1.2, S:S514F, on ORF1a:T4083M branch, USA
• + HV.1.3 Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA
• + HV.1.4 Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA
• + EG.5.1.11 Alias of XBB.1.9.2.5.1.11, S:K182Q, Indonesia
• + JR.1 Alias of XBB.1.9.2.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia
• + JR.1.1 Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C)
• + EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel
• + GA.2.1 Alias of XBB.1.17.1.2.1, S:E554K
• + GA.2.1.1 Alias of XBB.1.17.1.2.1.1, S:N450D, S:K478R
• + GA.4.1.2 Alias of XBB.1.17.1.4.1.2, S:T572I, England
• + GA.4.2 Alias of XBB.1.17.1.4.2, S:K558N, S:G1124S, England/Italy
• + GA.4.3 Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania
• + XBB.2.3.15 ORF1a:I4308V
• + JS.1 Alias of XBB.2.3.15.1, S:S256T
• + JS.2 Alias of XBB.2.3.15.2, S:T323I
• + XBB.2.3.16 S:K478N, USA
• + XCQ Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289

2023-10-05

• + JD.1.1.2 Alias of XBB.1.5.102.1.1.2, S:E583D, Ireland/UK, from sars-cov-2-variants/lineage-proposals#754
• + JD.1.1.3 Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark
• + JD.2 Alias of XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil
• + JE.1.1 Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R
• + GJ.1.2.3 Alias of XBB.2.3.3.1.2.3, S:T76I, Japan, on ORF1b:S997P branch
• + GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA，on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#628
• + GJ.1.2.6 Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch
• + GJ.1.2.7 Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch
• + GJ.1.2.8 Alias of XBB.2.3.3.1.2.8, S:T747I, USA
• + GJ.5 Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T
• + GJ.5.1 Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V

2023-10-04

• + XBB.1.3 Singapore, India/Italy, defined by S:A484T, pre ORF8:8*
• + XBB.1.5.43 C18501T, pre T17124C, Singapore/Malaysia/Indonesia
• + XBB.1.5.45 S:478R, C27425T, G28079T, pre T17124C, India-GJ/MH, from #1792
• + XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, pre T17124C, Guinea, from #1860
• + XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, pre T17124C, Indonesia
• + XBB.1.10 USA/Japan, S:A852V, S:R403K, pre ORF8:8*
• + XBB.1.19 Defined by S:486P, A10042G, T21363C, on C541T, pre ORF8:8* branch, Pakistan, from #1680
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from #2142
• + XBB.1.20 Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia
• + XBB.1.33 Defined by S:A376Trev, on ORF1b:L1061I, A27965G, pre ORF8:8* branch, found mainly in Italy, from pango-designation issue #1879
• + XBB.1.48 S:L455F, S:F456L (22928C), C2509T, on C541T, pre ORF8:8* branch, Pakistan, from #1681
• + XBB.1.49 S:346S, S:486P, on ORF1b:L1061I, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia from sars-cov-2-variants/lineage-proposals#208

2023-09-30

• + C.2.1 Alias of B.1.1.1.2.1, Aruba and Curacao, from #32
• + C.39 Alias of B.1.1.1.39, Chile and Peru lineage, from #178
• + P.1 Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586., from #77
• + B.1.1.29 Wales lineage, formerly temporarily assigned B.1.1.439 due to an error (see designation issue 50), from #50
• + N.10 Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675, from #40
• + B.1.1.316 International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation, from #14
• + B.1.1.317 Russian lineage, from #53
• + AW.1 Alias of B.1.1.464.1, Canadian lineage , from #103
• + B.1.1.519 USA/ Mexico lineage, from #111
• + BA.1.19 Alias of B.1.1.529.1.19, Europe lineage, from #475
• + BA.2.2 Alias of B.1.1.529.2.2, Hong Kong lineage, from #430
• + BA.2.3.11 Alias of B.1.1.529.2.3.11, Japan lineage, from #605
• + CM.6.1 Alias of B.1.1.529.2.3.20.6.1, S:A348S, from #1165
• + BA.2.24 Alias of B.1.1.529.2.24, Japan lineage, from #600
• + BA.2.60 Alias of B.1.1.529.2.60, Peru and Chile lineage, from #683
• + CA.3 Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I, from #1136
• + CA.4 Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L, from #1181
• + BM.1.1.1 Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S, from #1043
• + CV.2 Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P, from #1374
• + DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia, from #2045
• + DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, Spain, from sars-cov-2-variants/lineage-proposals#732
• + DV.7.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England, from #2258
• + FK.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.1, S:V445A, Australia, from sars-cov-2-variants/lineage-proposals#368
• + FK.1.4.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4.1, S:G181A, Australia/Puerto Rico, from sars-cov-2-variants/lineage-proposals#88
• + JP.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa, from sars-cov-2-variants/lineage-proposals#655
• + CH.1.1.32 Alias of B.1.1.529.2.75.3.4.1.1.1.1.32, S:L858I, N:P80Q, ORF1a:E974A, from #2150
• + CH.3 Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch, from #1375
• + BN.1.1 Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P, from #1176
• + BN.1.2.1 Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N, from #1238
• + FR.1.1 Alias of B.1.1.529.2.75.5.1.2.3.1.1, S:P82H, ORF1a:L293F, China, from #2006
• + FR.1.2 Alias of B.1.1.529.2.75.5.1.2.3.1.2, S:R190M, China, from #2028
• + BN.1.3.13 Alias of B.1.1.529.2.75.5.1.3.13 S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea, from sars-cov-2-variants/lineage-proposals#218
• + BN.1.7 Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y, from #1310
• + BY.1.2.1 Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P, from #1184
• + BA.2.75.9 Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T, from #1098
• + CB.1 Alias of B.1.1.529.2.75.9.1, England, defined by S:486V, from #1098
• + JN.1 Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe
• + BA.4.1.2 Alias of B.1.1.529.4.1.2, Austria lineage, from #614
• + BA.5.1.26 Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T, from #869
• + BF.7.7 Alias of B.1.1.529.5.2.1.7.7, Europe, S:D80G, from #1147
• + BF.7.14.3 Alias of B.1.1.529.5.2.1.7.14.3 China, S:A626V, from #1573
• + BV.2 Alias of B.1.1.529.5.2.20.2, defined by S:K444N, from #1122
• + CK.2 Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F, from #1190
• + CK.2.1 Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K, from #1125
• + CK.2.1.1 Alias of B.1.1.529.5.2.24.2.1.1, defined by S:S255F, from #1190
• + DG.1 Alias of B.1.1.529.5.2.24.2.1.1.1, defined by S:G252S, from #1288
• + DB.1 Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K, from #1258
• + BA.5.2.36 Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T, from #1203
• + CT.1 Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T, from #1203
• + BA.5.2.38 Alias of B.1.1.529.5.2.38, S:T430I, from #1254
• + DA.1 Alias of B.1.1.529.5.2.38.1, Indonesia, S:R346T, from #1254
• + BA.5.2.39 Alias of B.1.1.529.5.2.39, USA, S:R346T, from #1279
• + DN.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.1 UK, S:Y453F, from #1548
• + EZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43.1 Portugal, S:S247N, S:Y248S, from #1673
• + FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, from #1714
• + BE.3 Alias of B.1.1.529.5.3.1.3, USA lineage, from #723
• + CQ.2 Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/US, defined by S:V445A, from #1232
• + BA.5.6 Alias of B.1.1.529.5.6, USA lineage, from #738
• + B.1.243.1 Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf., from #35
• + B.1.351.3 Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere, from #65
• + B.1.438 Lineage circulating in multiple countries, from #48
• + B.1.466.2 Indonesia, from #30
• + B.1.575.1 Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I"., from #64
• + AY.5.5 Alias of B.1.617.2.5.5, European lineage, formally AY.97, from #363
• + AY.13 Alias of B.1.617.2.13, USA lineage, from #198
• + AY.14 Alias of B.1.617.2.14, USA lineage, from #198
• + AY.15 Alias of B.1.617.2.15, Canada lineage, from #198
• + AY.16 Alias of B.1.617.2.16, lineage in Kenya and multiple other countries, from #198
• + AY.17 Alias of B.1.617.2.17, Ireland and Northern Ireland lineage, from #198
• + AY.18 Alias of B.1.617.2.18, Canada lineage, from #198
• + AY.19 Alias of B.1.617.2.19, South Africa lineage, from #198
• + AY.20 Alias of B.1.617.2.20, USA and Mexico lineage, from #198
• + AY.20.1 Alias of B.1.617.2.20.1, Czech Republic lineage, from #318
• + AY.21 Alias of B.1.617.2.21, lineage predominantly in Italy and Switzerland, from #198
• + AY.22 Alias of B.1.617.2.22, predominantly Portugal lineage, from #198
• + AY.34.1.1 Alias of B.1.617.2.34.1.1, Brazil and Chile lineage, from #255
• + AY.58 Alias of B.1.617.2.58, European lineage, from #286
• + AY.63 Alias of B.1.617.2.63, Norway lineage, from #286
• + AY.66 Alias of B.1.617.2.66, European lineage, from #271
• + AY.69 Alias of B.1.617.2.69, South Korea lineage, from #260
• + AY.99 Alias of B.1.617.2.99, South Africa and Nigeria lineage, from #258
• + AY.99.1 Alias of B.1.617.2.99.1, Brazil lineage, from #258
• + AY.99.2 Alias of B.1.617.2.99.2, Brazil lineage, from #258
• + AY.104 Alias of B.1.617.2.104, Sri Lanka lineage, from #289
• + AY.106 Alias of B.1.617.2.106, lineage in Jordan and other countries, from #287
• + AY.112.1 Alias of B.1.617.2.112.1, Bahrain lineage, from #283
• + AY.121 Alias of B.1.617.2.121, European lineage, from #301
• + AY.121.1 Alias of B.1.617.2.121.1, Poland and Germany lineage, from #344
• + AY.122 Alias of B.1.617.2.122, European lineage, from #320
• + AY.123 Alias of B.1.617.2.123, Predominantly Belgium and France lineage, from #306
• + AY.124 Alias of B.1.617.2.124, lineage in Portugal and other European countries, from #281
• + XA Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage, from #63
• + XAY.1 South Africa/US lineage with 4 AA substitutions including S:D253G, from #1208
• + XAY.2.3 Denmark, ORF1a:A131V, from #1896
• + XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil, from #2031
• + EK.3 Alias of XBB.1.5.13.3, S:P251S, Scotland/England/Ireland, from #1684
• + GF.1 Alias of XBB.1.5.24.1, S:E748V, C19524T, from #1921
• + XBB.1.5.30 S:A348T, USA, from #1660
• + FT.3 Alias of XBB.1.5.39.3, S:Q52H, USA, from sars-cov-2-variants/lineage-proposals#266
• + FT.3.1 Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA, from sars-cov-2-variants/lineage-proposals#266
• + FT.3.1.1 Alias of XBB.1.5.39.3.1.1, S:A348S, USA, from #2140
• + GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam, from #1966
• + JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA, from sars-cov-2-variants/lineage-proposals#209
• + JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa, from sars-cov-2-variants/lineage-proposals#209
• + HP.1 Alias of XBB.1.5.55.1, N:L13F, US/Mexico, from sars-cov-2-variants/lineage-proposals#277
• + HP.1.1 Alias of XBB.1.5.55.1.1, S:478R, Mexico, from sars-cov-2-variants/lineage-proposals#277
• + HZ.1 Alias of XBB.1.5.68.1, S:K478R, 23266T, USA, from sars-cov-2-variants/lineage-proposals#514
• + GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada, from sars-cov-2-variants/lineage-proposals#179
• + GK.1.4 Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil, from sars-cov-2-variants/lineage-proposals#504
• + GK.2.1.1 Alias of XBB.1.5.70.2.1.1, S:P1162S , from sars-cov-2-variants/lineage-proposals#716
• + GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D, from sars-cov-2-variants/lineage-proposals#470
• + GK.2.3 Alias of XBB.1.5.70.2.3, S:K356T, England, from sars-cov-2-variants/lineage-proposals#813
• + GK.4 Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276
• + HR.1 Alias of XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA, from sars-cov-2-variants/lineage-proposals#323
• + HQ.1 Alias of XBB.1.5.92.1, S:E554K, Ecuador, from sars-cov-2-variants/lineage-proposals#170
• + XBB.1.5.93 C337T, C19186T, USA, from sars-cov-2-variants/lineage-proposals#363
• + HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic, from sars-cov-2-variants/lineage-proposals#363
• + HY.1 Alias of XBB.1.5.100.1, S:478R, US/Mexico, from sars-cov-2-variants/lineage-proposals#453
• + JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain, from #2174
• + JD.1.1.1 Alias of XBB.1.5.102.1.1.1, S:Y248H, from sars-cov-2-variants/lineage-proposals#864
• + JD.1.1.2 Alias of XBB.1.5.102.1.1.1, S:E583D, Ireland/UK, from sars-cov-2-variants/lineage-proposals#754
• + XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina, from #2192
• + XBB.1.8 Denmark, S:186insSGG, C3241T, from #1455
• + HN.1 Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic, from sars-cov-2-variants/lineage-proposals#408
• + FL.1.5.2 Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark, from sars-cov-2-variants/lineage-proposals#614
• + FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/lineage-proposals#59
• + FL.4.3 Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar, from sars-cov-2-variants/lineage-proposals#153
• + FL.15.1.1 Alias of XBB.1.9.1.15.1.1, S:A475V, Canada/Romania/Belgium, from sars-cov-2-variants/lineage-proposals#646
• + FL.15.2 Alias of XBB.1.9.1.15.2, S:Q14H, China, from sars-cov-2-variants/lineage-proposals#578
• + FL.20.2 Alias of XBB.1.9.1.20.2, S:478R, from sars-cov-2-variants/lineage-proposals#571
• + FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea, from #2143
• + FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China, from sars-cov-2-variants/lineage-proposals#187
• + FL.32 Alias of XBB.1.9.1.32, S:E554Q, S:V6L, from sars-cov-2-variants/lineage-proposals#719
• + FL.32.1 Alias of XBB.1.9.1.32.1, S:F456L, USA, from sars-cov-2-variants/lineage-proposals#719
• + FL.33.1 Alias of XBB.1.9.1.33.1, S:478R, Georgia, from sars-cov-2-variants/lineage-proposals#828
• + EG.2.2 Alias of XBB.1.9.2.2.2, S:K304N, Indonesia/Japan, from sars-cov-2-variants/lineage-proposals#517
• + EG.2.3 Alias of XBB.1.9.2.2.3, S:I742V, Indonesia/Singapore, from sars-cov-2-variants/lineage-proposals#587
• + EG.2.4 Alias of XBB.1.9.2.2.4, S:K356T, ORF1a:G2265D, Singapore, from sars-cov-2-variants/lineage-proposals#586
• + EG.2.5 Alias of XBB.1.9.2.2.4, S:Q675H, Indonesia, from sars-cov-2-variants/lineage-proposals#445
• + EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China, from sars-cov-2-variants/lineage-proposals/#46
• + EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia, from #1918
• + HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China, from sars-cov-2-variants/lineage-proposals#432
• + HK.3.3 Alias of XBB.1.9.2.5.1.1.3.3, S:S256L, N:P364L, China/Singapore, from sars-cov-2-variants/lineage-proposals#744
• + HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China, from #2230
• + HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England, from sars-cov-2-variants/lineage-proposals#564
• + EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301
• + JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F, S:S704L, Europe, from #2231
• + JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan, from #2208
• + EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F, China (most of it with C12100G), from sars-cov-2-variants/lineage-proposals#537
• + EG.5.2.1 Alias of XBB.1.9.2.5.2.1, S:S704L, USA, from sars-cov-2-variants/lineage-proposals#189
• + EG.5.2.3 Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA, from sars-cov-2-variants/lineage-proposals#353
• + EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada, from #1950
• + EG.6.1.1 Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I, from sars-cov-2-variants/lineage-proposals#546
• + EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S, from sars-cov-2-variants/lineage-proposals#280
• + EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T, from sars-cov-2-variants/lineage-proposals#57
• + EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria, from sars-cov-2-variants/lineage-proposals#346
• + EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V, from sars-cov-2-variants/lineage-proposals#346
• + FP.2.1 Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia, from #2012
• + FP.2.1.1 Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria, from sars-cov-2-variants/lineage-proposals#329
• + FP.3 Alias of XBB.1.11.1.3, S:478R, Indonesia/Malaysia, from #2021
• + GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I, from sars-cov-2-variants/lineage-proposals/#308
• + JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales, from sars-cov-2-variants/lineage-proposals#457
• + HF.1.1 XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada, from sars-cov-2-variants/lineage-proposals#521
• + JM.1 Alias of XBB.1.16.15.1, S:Q52H, England/Wales, from sars-cov-2-variants/lineage-proposals#569
• + XBB.1.16.18 ORF7a:T39I, from sars-cov-2-variants/lineage-proposals#276
• + GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61, from #2142
• + XBB.1.19.2 Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233
• + FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan, from sars-cov-2-variants/lineage-proposals#487
• + HU.2 Alias of XBB.1.22.2.2, S:T76I, ORF1a:R24H, ORF1b:A1428V, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#364
• + XBB.1.27 Defined by S:478R, S:A890V, Mexico/US/India, from #1654
• + XBB.1.28 Defined by S:403K, Europe, from #1757
• + XBB.1.31 Defined by S:453F and S:478R, Indonesia/Singapore, from #1837
• + XBB.1.31.1 S:E554K, Indonesia, from sars-cov-2-variants/lineage-proposals#141
• + XBB.1.32 Defined by ORF1a:E148D, Philippines, from #1827
• + XBB.1.37 Defined by A5371G, Indonesia/Russia, from #1929
• + XBB.1.41.1 S:478R, France, from sars-cov-2-variants/lineage-proposals#150
• + XBB.1.45.1 S:486P, A3139G, A19137G, C28291T, USA/Portugal, from #1937
• + XBB.2.3.3 S:182N, India/USA, from #1810
• + GJ.1.1 Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I, from sars-cov-2-variants/lineage-proposals#109
• + GJ.1.2.1 Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain, from sars-cov-2-variants/lineage-proposals#446
• + JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/US, from sars-cov-2-variants/lineage-proposals#597
• + GM.3.1 Alias of XBB.2.3.6.3.1, S:N388K, Japan, from sars-cov-2-variants/lineage-proposals#450
• + HG.2 Alias of XBB.2.3.8.2, S:T259I, South Korea/USA, from sars-cov-2-variants/lineage-proposals#652
• + GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore, from sars-cov-2-variants/lineage-proposals#367
• + GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya, from sars-cov-2-variants/lineage-proposals#200
• + GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I, from sars-cov-2-variants/lineage-proposals#102
• + GS.2 Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei, from sars-cov-2-variants/lineage-proposals#93
• + GS.3 Alias of XBB.2.3.11.3, S:R190S, USA/UK, from sars-cov-2-variants/lineage-proposals#669
• + GS.4 Alias of XBB.2.3.11.4, M:A104V, ORF1a:A181T, France, from sars-cov-2-variants/lineage-proposals#668
• + GS.4.1 Alias of XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France, from sars-cov-2-variants/lineage-proposals#668
• + GS.5 Alias of XBB.2.3.11.5, M:A104V, S:Q218H, from sars-cov-2-variants/lineage-proposals#768
• + HW.1 Alias of XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia, from sars-cov-2-variants/lineage-proposals#71
• + HW.1.1 Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland, from sars-cov-2-variants/lineage-proposals#452
• + XBF.1.1 England, S:P621S, from #1651

2023-09-28

• + FL.15.1 Alias of XBB.1.9.1.15.1, S:L455F, ORF1a:T2007I, on ORF1a:S2185N branch, from #2293
• + FL.15.1.1 Alias of XBB.1.9.1.15.1.1, S:A475V, Canada/Romania/Belgium
• + FL.15.2 Alias of XBB.1.9.1.15.2, S:Q14H, China
• + FL.15.3 Alias of XBB.1.9.1.15.3, S:G181V, North America

2023-09-27

• + EP.1.1 Alias of B.1.1.529.2.75.3.1.1.4.1.1, ORF1a:P4120S, ORF8:Q18H, Bhutan
• + EP.1.1.1 Alias of B.1.1.529.2.75.3.1.1.4.1.1.1, S:T22N, S:T76I, S:T1006A, Bhutan/Thailand/Singapore
• + FR.1.5 Alias of B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan
• + HC.3 Alias of XBB.1.5.44.3, S:P793S, USA
• + HC.4 Alias of XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada
• + JD.1.1.1 Alias of XBB.1.5.102.1.1.1, S:Y248H
• + JD.1.1.2 Alias of XBB.1.5.102.1.1.1, S:E583D, Ireland/UK
• + FL.36 Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805
• + EG.5.1.10 Alias of XBB.1.9.2.5.1.10, ORF1a:I3758V, Portugal/Spain
• + GA.4.1.1 Alias of XBB.1.17.1.4.1.1, S:Q675H
• + XCP Recombinant lineage of EG.5.1.10 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772

2023-09-25

• + CH.1.1.31 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31, ORF1a:N593S, ORF1a:P1497S, ORF1a:T2791I, ORF1b:D1024N, South Africa
• + JP.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa
• + CH.1.1.32 Alias of B.1.1.529.2.75.3.4.1.1.1.1.32, S:L858I, N:P80Q, ORF1a:E974A
• + GK.2.1.1 Alias of XBB.1.5.70.2.1.1, S:P1162S
• + FL.4.11 Alias of XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan，from #2074
• + EG.4.5 Alias of XBB.1.9.2.4.5, S:478R, Indonesia/France
• + HK.3.2 Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, China，from sars-cov-2-variants/lineage-proposals#730
• + GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/628

2023-09-23

• + JM.1 Alias of XBB.1.16.15.1, S:Q52H, England/Wales
• + JM.2 Alias of XBB.1.16.15.2, S:R78S, Europe/North America
• + GS.5 Alias of XBB.2.3.11.5, M:A104V, S:Q218H

2023-09-22

• + FL.10.3 Alias of XBB.1.9.1.10.3, S:G181R
• + FL.20.2 Alias of XBB.1.9.1.20.2, S:478R
• + FL.31 Alias of XBB.1.9.1.31, ORF1b:M657I
• + FL.31.1 Alias of XBB.1.9.1.31.1, S:478R, S:D80H, S:Q613H, Morocco/Europe/US/Canada, from sars-cov-2-variants/lineage-proposals#836
• + FL.32 Alias of XBB.1.9.1.32, S:E554Q, S:V6L
• + FL.32.1 Alias of XBB.1.9.1.32.1, S:F456L, USA
• + FL.33 Alias of XBB.1.9.1.33, ORF1b:A1377V
• + FL.33.1 Alias of XBB.1.9.1.33.1, S:478R, Georgia
• + FL.34 Alias of XBB.1.9.1.34, S:D1118Y
• + FL.35 Alias of XBB.1.9.1.35, ORF8:S103L, South Africa
• + XCN Recombinant lineage of FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China (Anhui/Shanghai), from sars-cov-2-variants/lineage-proposals#842

2023-09-18

• + GK.2.3 Alias of XBB.1.5.70.2.3, S:K356T, England
• + GK.4 Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I
• + XBB.1.5.106 S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270
• + JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F, S:S704L, Europe
• + EG.5.1.9 Alias of XBB.1.9.2.5.1.9, S:L176F (on ORF1a:D982G branch)

2023-09-12

• + DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, Spain
• + DV.7.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England
• + EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F, China (most of it with C12100G)
• + GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan
• + GW.5.1.1 Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277

2023-09-11

• + CK.1.1.2 Alias of B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, #2271
• + EF.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, Japan, S:S704T
• + GK.3.2 Alias of XBB.1.5.70.3.2, S:T572I, USA, #2272
• + FL.4.11 Alias of XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan
• + HK.3.2 Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, China
• + HK.3.3 Alias of XBB.1.9.2.5.1.1.3.3, S:S256L, N:P364L, China/Singapore
• + EG.14 Alias of XBB.1.9.2.14, Orf1b:K1383R, #2274
• + GJ.1.2.2 Alias of XBB.2.3.3.1.2.2, S:478R, Europe/US/Australia
• + GJ.1.2.3 Alias of XBB.2.3.3.1.2.3, S:T76I, Japan
• + GJ.1.2.4 Alias of XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea
• + GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA

2023-09-08

• + EG.6.1.1 Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I

2023-09-07

• + FY.4.1.2 Alias of XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya

2023-09-06

• + BA.2.48 Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from pango-designation issue #634
• + DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L(T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
• + BA.2.86.1 Alias of B.1.1.529.2.86.1, ORF1a:K1973R, C12815T, mainly Europe, from #2236
• + DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V, T4579A
• + BA.5.2.23 Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from pango-designation issue #1090
• + EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R, T4579A, from #1786
• + BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L(T22928C), Reunion
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/650
• + JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA, from #1798
• + HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202
• + JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA From sars-cov-2-variants/lineage-proposals#209
• + JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa From sars-cov-2-variants/lineage-proposals#209
• + GK.1.4 Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil From sars-cov-2-variants/lineage-proposals#504
• + GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D From sars-cov-2-variants/lineage-proposals#470
• + HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L(T22928C), USA, from #2237
• + JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain From #2174
• + JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136
• + XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina From #2192
• + XBB.1.5.104 S:K304Q, USA, from #1798
• + FL.1.5.2 Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark From sars-cov-2-variants/lineage-proposals#614
• + FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from sars-cov-2-variants/lineage-proposals#342
• + FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia, from #2024
• + FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G, from #2081
• + FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China, from #2087
• + FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220
• + FL.21 Alias of XBB.1.9.1.21, A10564T
• + FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187
• + EG.2.2 Alias of XBB.1.9.2.2.2, S:K304N, Indonesia/Japan From sars-cov-2-variants/lineage-proposals#517
• + EG.2.3 Alias of XBB.1.9.2.2.3, S:I742V, Indonesia/Singapore From sars-cov-2-variants/lineage-proposals#587
• + EG.2.4 Alias of XBB.1.9.2.2.4, S:K356T, ORF1a:G2265D, Singapore From sars-cov-2-variants/lineage-proposals#586
• + EG.2.5 Alias of XBB.1.9.2.2.4, S:Q675H, Indonesia From sars-cov-2-variants/lineage-proposals#445
• + HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193
• + HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA, from #2184
• + HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China From #2230
• + HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England From sars-cov-2-variants/lineage-proposals#564
• + JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218
• + EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117
• + JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan From #2208
• + EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394
• + EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from sars-cov-2-variants/lineage-proposals#523
• + EG.13 Alias of XBB.1.9.2.13, ORF1a:K798N
• + FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C, from #1832
• + XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India, from #1802
• + GY.8 Alias of XBB.1.16.2.8, S:F456L(T22928C), C25452T, Japan, from #2148
• + JF.1 Alias of XBB.1.16.6.1, S:L455F, USA, from #2207
• + JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales From sars-cov-2-variants/lineage-proposals#457
• + HF.1.1 XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada From sars-cov-2-variants/lineage-proposals#521
• + XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore, from #2187
• + GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar From sars-cov-2-variants/lineage-proposals#661
• + GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L(T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61
• + XBB.1.41.2 S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389
• + JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/US From sars-cov-2-variants/lineage-proposals#597
• + GM.3.1 Alias of XBB.2.3.6.3.1, S:N388K, Japan From sars-cov-2-variants/lineage-proposals#450
• + HG.2 Alias of XBB.2.3.8.2, S:T259I, South Korea/USA From sars-cov-2-variants/lineage-proposals#652
• + GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore From sars-cov-2-variants/lineage-proposals#367
• + GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya From sars-cov-2-variants/lineage-proposals#200
• + GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I From sars-cov-2-variants/lineage-proposals#102
• + GS.2 Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei From sars-cov-2-variants/lineage-proposals#93
• + GS.3 Alias of XBB.2.3.11.3, S:R190S, USA/UK From sars-cov-2-variants/lineage-proposals#669
• + GS.4 Alias of XBB.2.3.11.4, M:A104V, ORF1a:A181T, France From sars-cov-2-variants/lineage-proposals#668
• + GS.4.1 Alias of XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France From sars-cov-2-variants/lineage-proposals#668
• + XCH.1 S:T573I, from #2173
• + XCM Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674

2023-09-05

• + JL.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2.1, S:E1111Q, Japan, from #2168
• + HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255
• + JG.2 Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249
• + XBB.1.16.24 S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223
• + *BQ.1.1.33 Withdrawn: Alias of B.1.1.529.5.3.1.1.1.1.1.1.33, US lineage, child of BQ.1.1.3
• + *HK.10 Withdrawn unless lineage grows: Alias of XBB.1.9.2.5.1.1.10, S:L455F, on C19983T branch, China

2023-09-02

• + JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA
• + GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D
• + HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L, USA, from #2237
• + XBB.1.5.104 S:K304Q, USA
• + XBB.1.5.105 S:K304N, USA/Europe
• + FL.30 Alias of XBB.1.9.1.30, S:484K, Greece, from #2206
• + HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China
• + HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England
• + HK.10 Alias of XBB.1.9.2.5.1.1.10, S:L455F, on C19983T branch, China/England/Denmark
• + JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan
• + HF.1.1 XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada
• + HF.1.2 XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA
• + XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore
• + GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore
• + XCL Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227

2023-09-01

• + BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa from #1861
• + JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068
• + JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484T, S:V486A, USA/Canada/Finland, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/650
• + FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180
• + FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia
• + FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G
• + FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China
• + FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040
• + FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA
• + EG.13 Alias of XBB.1.9.2.13, ORF1a:K789N
• + FY.3.2 Alias of XBB.1.22.1.3.2, ORF1a:E3764G, China, from #2000
• + FY.3.3 Alias of XBB.1.22.1.3.3, ORF3a:V48F, China
• + XCK Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215

2023-08-31

• + XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina
• + EG.2.2 Alias of XBB.1.9.2.2.2, S:K304N, Indonesia/Japan
• + EG.2.3 Alias of XBB.1.9.2.2.3, S:I742V, Indonesia/Singapore
• + EG.2.4 Alias of XBB.1.9.2.2.4, S:K356T, ORF1a:G2265D, Singapore
• + EG.2.5 Alias of XBB.1.9.2.2.4, S:Q675H, Indonesia
• + HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China
• + JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France
• + XCH.1 S:T573I

2023-08-26

• + JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain
• + JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil

2023-08-25

• + HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada
• + JD.1 Alias of XBB.1.5.102.1, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071
• + EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N
• + GM.3 Alias of XBB.2.3.6.3, ORF1a:R4017K, Singapore
• + GM.3.1 Alias of XBB.2.3.6.3.1, S:N388K, Japan
• + GS.4 Alias of XBB.2.3.11.4, M:A104V, ORF1a:A181T, France
• + XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609

2023-08-24

• + JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa
• + GK.1.4 Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil
• + GK.2.1 Alias of XBB.1.5.70.2.1, ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C
• + FL.1.5.2 Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark
• + HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China
• + HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA
• + JF.1 Alias of XBB.1.16.6.1, S:L455F, USA
• + JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales
• + JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/US
• + HG.2 Alias of XBB.2.3.8.2, S:T259I, South Korea/USA
• + GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I
• + GS.2 Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei
• + GS.3 Alias of XBB.2.3.11.3, S:R190S, USA/UK
• + GS.4 Alias of XBB.2.3.11.4, M:A104V, ORF1a:A104V, France
• + GS.4.1 Alias of XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France
• + XCH Recombinant lineage of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173

2023-08-23

• + XBB.1.5.102 C6896T, C14085T, C19488T, Brazil-Amazonas
• + JD.1 Alias of XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071

2023-08-22

• + BN.1.3.13 Alias of B.1.1.529.2.75.5.1.3.13 S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea From sars-cov-2-variants/lineage-proposals#218
• + HQ.1 Alias of XBB.1.5.92.1, S:E554K, Ecuador From sars-cov-2-variants/lineage-proposals#170
• + FP.2.1 Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia From #2012
• + GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar
• + FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan From sars-cov-2-variants/lineage-proposals#487
• + FW.1.1 Alias of XBB.1.28.1.1.1, S:N148T, UK
• + JC.1 Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii
• + XBB.1.41.2 S:S494P
• + GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore
• + GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya

2023-08-19

• + XBB.1.5.92 ORF1a:T1168I, Ecuador

2023-08-18

• + BA.2.86 Alias of B.1.1.529.2.86, from pango-designation issue #2183

2023-08-16

• + HP.1 Alias of XBB.1.5.55.1, N:L13F, US/Mexico From sars-cov-2-variants/lineage-proposals#277
• + HP.1.1 Alias of XBB.1.5.55.1.1, S:478R, Mexico From sars-cov-2-variants/lineage-proposals#277
• + HZ.1 Alias of XBB.1.5.68.1, S:K478R, 23266T, USA From sars-cov-2-variants/lineage-proposals#514
• + HZ.2 Alias of XBB.1.5.68.2, ORF1a:H3580Y, USA
• + HZ.3 Alias of XBB.1.5.68.3, ORF1a:I3693T, USA
• + HY.1 Alias of XBB.1.5.100.1, S:478R, US/Mexico From sars-cov-2-variants/lineage-proposals#453
• + FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/342
• + EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I From sars-cov-2-variants/lineage-proposals#301
• + EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/523
• + FP.2.1.1 Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria From sars-cov-2-variants/lineage-proposals#329
• + GY.8 Alias of XBB.1.16.2.8, S:F456L, C25452T, Japan，from #2148
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L, Pakistan From sars-cov-2-variants/lineage-proposals#61
• + HU.1.1 Alias of XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA，from #2136
• + GJ.1.2.1 Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain From sars-cov-2-variants/lineage-proposals#446
• + GJ.4 Alias of XBB.2.3.3.4, S:M153I，from #1902
• + HW.1 Alias of XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia From sars-cov-2-variants/lineage-proposals#71
• + HW.1.1 Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland From sars-cov-2-variants/lineage-proposals#452

2023-08-11

• + JB.1 Alias of XBB.1.5.53.1, S:N148T, South Africa
• + JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA
• + JA.1 Alias of XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, see sars-cov-2-variants/lineage-proposals#240

2023-08-08

• + XBB.1.5.101 ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam
• + FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E
• + EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia
• + EG.12 Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India
• + GY.8 Alias of XBB.1.16.2.8, S:F456L, C25452T, Japan
• + FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan
• + HU.1 Alias of XBB.1.22.2.1, S:K529N, France, from #2136
• + HU.1.1 Alias of XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA
• + XBB.1.22.3 Defined by ORF1a:P3504L, ORF1b:H1838N, Japan
• + GJ.4 Alias of XBB.2.3.3.4, S:M153I

2023-08-07

• + BN.1.3.13 Alias of B.1.1.529.2.75.5.1.3.13 S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea

2023-08-05

• + HZ.1 Alias of XBB.1.5.68.1, S:K478R, 23266T, USA
• + HZ.2 Alias of XBB.1.5.68.2, ORF1a:H3580Y, USA
• + HZ.3 Alias of XBB.1.5.68.3, ORF1a:I3693T, USA
• + GJ.1.2.1 Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain

2023-08-03

• + GK.3 Alias of XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada
• + GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA
• + XBB.1.5.100 S:V1122M, USA/Mexico
• + HY.1 Alias of XBB.1.5.100.1, S:478R, US/Mexico
• + HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA
• + HW.1 Alias of XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia
• + HW.1.1 Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland

2023-08-01

• + BF.7.14.5 Alias of B.1.1.529.5.2.1.7.14.5 China, C20703T, from #1607
• + FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V from #2030
• + XBB.1.16.22 ORF3a:E242Q, from #1893
• + HU.1 Alias of XBB.1.22.2.1, S:K529N, from #2136

2023-07-31

• + HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/59
• + HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/359
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/414
• + EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222
• + EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117
• + EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394
• + GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/345
• + XBB.1.16.17 S:E554K, mainly in NZ, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/354
• + GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria from https://github.com/sars-cov-2-variants/lineage-proposals/issues/265
• + FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/302
• + FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/257
• + HL.1 Alias of XBB.1.42.2.1, S:E583D from https://github.com/sars-cov-2-variants/lineage-proposals/issues/352

2023-07-29

• + FK.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.1, S:V445A, Australia From sars-cov-2-variants/lineage-proposals#368
• + FK.1.4.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4.1, S:G181A, Australia/Puerto Rico From sars-cov-2-variants/lineage-proposals#88
• + HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/59 From sars-cov-2-variants/lineage-proposals#59
• + FT.3 Alias of XBB.1.5.39.3, S:Q52H, USA From sars-cov-2-variants/lineage-proposals#266
• + FT.3.1 Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA From sars-cov-2-variants/lineage-proposals#266
• + FT.3.1.1 Alias of XBB.1.5.39.3.1.1, S:A348S, USA From #2140
• + HR.1 Alias of XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA From sars-cov-2-variants/lineage-proposals#323
• + XBB.1.5.93 C337T, C19186T, USA From sars-cov-2-variants/lineage-proposals#363
• + HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic From sars-cov-2-variants/lineage-proposals#363
• + HN.1 Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic From sars-cov-2-variants/lineage-proposals#408
• + FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea From #2143
• + FL.21.2 Alias of XBB.1.9.1.21.1, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187
• + FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V From sars-cov-2-variants/lineage-proposals#119
• + HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/359 From sars-cov-2-variants/lineage-proposals#359
• + HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China From sars-cov-2-variants/lineage-proposals#432
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/414 From sars-cov-2-variants/lineage-proposals#414
• + EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222 From sars-cov-2-variants/lineage-proposals#222
• + EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117 From sars-cov-2-variants/lineage-proposals#428
• + EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394 From sars-cov-2-variants/lineage-proposals#394
• + EG.5.2.1 Alias of XBB.1.9.2.5.2.1, S:S704L, USA From sars-cov-2-variants/lineage-proposals#189
• + EG.5.2.3 Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA From sars-cov-2-variants/lineage-proposals#353
• + EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S From sars-cov-2-variants/lineage-proposals#280
• + EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T From sars-cov-2-variants/lineage-proposals#57
• + EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria From sars-cov-2-variants/lineage-proposals#346
• + EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V From sars-cov-2-variants/lineage-proposals#346
• + FP.2.1.1 Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria
• + FP.2.1.2 Alias of XBB.1.11.1.2.1.2, S:P521S, Indonesia
• + GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/345 From sars-cov-2-variants/lineage-proposals#345
• + XBB.1.16.17 S:E554K, mainly in NZ, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/354 From sars-cov-2-variants/lineage-proposals#354
• + XBB.1.16.18 ORF7a:T39I From sars-cov-2-variants/lineage-proposals#276
• + GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria from https://github.com/sars-cov-2-variants/lineage-proposals/issues/265 From sars-cov-2-variants/lineage-proposals#265
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:L456L, Pakistan From sars-cov-2-variants/lineage-proposals#61
• + XBB.1.19.2 Defined by S:P521S, Pakistan From sars-cov-2-variants/lineage-proposals#233
• + FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/302 From sars-cov-2-variants/lineage-proposals#302
• + FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/257 From sars-cov-2-variants/lineage-proposals#257
• + HU.2 Alias of XBB.1.22.2.2, S:T76I, ORF1a:R24H, ORF1b:A1428V, Australia/New Zealand From sars-cov-2-variants/lineage-proposals#364
• + XBB.1.31.1 S:E554K, Indonesia From sars-cov-2-variants/lineage-proposals#141
• + HL.1 Alias of XBB.1.42.2.1, S:E583D from https://github.com/sars-cov-2-variants/lineage-proposals/issues/352 From sars-cov-2-variants/lineage-proposals#352

2023-07-28

• + FT.3.1.1 Alias of XBB.1.5.39.3.1.1, S:A348S, USA
• + FL.19 Alias of XBB.1.9.1.19, T2377C, C17502T, T24505G, South Korea
• + FL.19.1 Alias of XBB.1.9.1.19.1, S:F456L (22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138
• + FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea
• + FL.21.2 Alias of XBB.1.9.1.21.1, ORF1a:V1019F, ORF1a:I2873M, China
• + FU.5 Alias of XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137
• + HU.1 Alias of XBB.1.22.2.1, S:K529N
• + HU.2 Alias of XBB.1.22.2.2, S:T76I, ORF1a:R24H, ORF1b:A1428V, Australia/New Zealand

2023-07-27

• + HT.1 Alias of XBB.1.5.49.1, S:148T, T4798C, Mexico
• + HT.2 Alias of XBB.1.5.49.2, S:T51I
• + HP.1 Alias of XBB.1.5.55.1, N:L13F, US/Mexico
• + HP.1.1 Alias of XBB.1.5.55.1.1, S:478R, Mexico
• + HR.1 Alias of XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA
• + XBB.1.5.92 ORF1a:T1168I, C823T, Ecuador
• + HQ.1 Alias of XBB.1.5.92.1, S:E554K, Ecuador
• + XBB.1.5.95 ORF1a:A1851V
• + HS.1 Alias of XBB.1.5.95.1, S:478R, Mexico
• + XBB.1.5.99 ORF1a:V1122A, ORF1a:T2121I, Slovakia/Austria
• + FL.20.1 Alias of XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145
• + GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:L456L, Pakistan
• + XBB.1.19.2 Defined by S:P521S, Pakistan

2023-07-26

• + DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L, Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
• + DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England
• + XBB.1.5.98 S:E554K, ORF8:V32L, Ghana
• + XBB.1.5.99 S:E554K, ORF1a:T1168I, C823T, Ecuador
• + EG.5.2.1 Alias of XBB.1.9.2.5.2.1, S:S704L, USA
• + EG.5.2.2 Alias of XBB.1.9.2.5.2.2, ORF1b:T239I, China
• + EG.5.2.3 Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA
• + XBB.1.16.18 ORF7a:T39I
• + XBB.1.16.19 ORF1b:V839I
• + XBB.1.16.20 ORF7b:S31L
• + XBB.1.16.21 ORF1a:V4072I
• + XBB.1.16.22 ORF3a:E242Q

2023-07-25

• + FK.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.1, S:V445A, Australia
• + FK.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.2, C9223T, T23071G
• + FK.1.4.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4.1, S:G181A, Australia/Puerto Rico
• + HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/59
• + GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada From sars-cov-2-variants/lineage-proposals#179
• + XBB.1.5.97 S:T941S, C7834T, New Zealand/Australia
• + HN.1 Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic
• + FL.4.3 Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar From sars-cov-2-variants/lineage-proposals#153
• + FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V
• + EG.1.7 Alias of XBB.1.9.2.1.7, S:E156V, Europe
• + EG.1.8 Alias of XBB.1.9.2.1.8, S:S640F, ORF1b:D161G, ORF1b:P2321L, China
• + EG.4.4 Alias of XBB.1.9.2.4.4, ORF1a:Y1465C, ORF1b:H873Y, Germany/Austria
• + HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/359
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/414
• + EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222
• + EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117
• + EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394
• + EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S
• + EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T
• + EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria
• + EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V
• + XBB.1.16.17 S:E554K, mainly in NZ, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/354
• + GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria from https://github.com/sars-cov-2-variants/lineage-proposals/issues/265
• + FY.2.1 Alias of XBB.1.22.1.2.1, S:A684V, from #2080
• + FY.4.1 Alias of XBB.1.22.1.4.1, S:S494P, Kenya from #1979
• + FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/302
• + FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/257
• + XBB.1.41.1 S:478R, France From sars-cov-2-variants/lineage-proposals#150
• + HL.1 Alias of XBB.1.42.2.1, S:E583D from https://github.com/sars-cov-2-variants/lineage-proposals/issues/352
• + GJ.1.1 Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I From sars-cov-2-variants/lineage-proposals#109

2023-07-24

• + HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia
• + FT.2 Alias of XBB.1.5.39.2, S:K1045N, Canada-QC/USA-NY
• + FT.3 Alias of XBB.1.5.39.3, S:Q52H, USA
• + FT.3.1 Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA
• + FT.4 Alias of XBB.1.5.39.4, S:E180Q, Germany
• + GN.1.1 Alias of XBB.1.5.73.1.1, ORF1b:A1643V, Peru
• + GN.2 Alias of XBB.1.5.73.2, ORF3a:A99G, Peru
• + GN.3 Alias of XBB.1.5.73.3, C27143T, Peru
• + GN.4 Alias of XBB.1.5.73.4, ORF1a:Q3966L, Peru
• + GN.5 Alias of XBB.1.5.73.5, ORF1a:L1110I, ORF1a:S4135F, Peru
• + HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic
• + FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China
• + FL.13.3 Alias of XBB.1.9.1.13.3, T19110C
• + FL.13.3.1 Alias of XBB.1.9.1.13.3.1, S:E154Q, England
• + FL.28 Alias of XBB.1.9.1.28, S:K478R, ORF1a:S1520F, ORF3a:R68I, Spain
• + HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China
• + HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China
• + HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China
• + HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China
• + HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China
• + EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I
• + EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T
• + EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R
• + EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal
• + EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA
• + XBB.1.16.17 S:E554K
• + GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria
• + GA.5 Alias of XBB.1.17.1.5, T23797C
• + GA.6 Alias of XBB.1.17.1.6, ORF1a:I2138V, G8785A, Ghana
• + GA.6.1 Alias of XBB.1.17.1.6.1, S:478R, A19767G, C29642T
• + FY.2.1 Alias of XBB.1.22.1.2.1, S:A684V
• + FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L
• + FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E
• + FW.3 Alias of XBB.1.28.1.3, ORF1a:D2627N
• + XBB.1.42.2 C6040T, G9049A
• + HL.1 Alias of XBB.1.42.2.1, S:E583D
• + HL.2 Alias of XBB.1.42.2.2, S:S929N, China

2023-07-22

• + BA.2.75.9 Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T From #1098
• + CB.1 Alias of B.1.1.529.2.75.9.1, England, defined by S:486V From #1098
• + CK.2 Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F From #1190
• + CK.2.1.1 Alias of B.1.1.529.5.2.24.2.1.1, defined by S:S255F From #1190
• + BA.5.2.36 Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T From #1203
• + CT.1 Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T From #1203
• + BA.5.2.38 Alias of B.1.1.529.5.2.38, S:T430I From #1254
• + DA.1 Alias of B.1.1.529.5.2.38.1, Indonesia, S:R346T From #1254
• + AY.13 Alias of B.1.617.2.13, USA lineage From #198
• + AY.14 Alias of B.1.617.2.14, USA lineage From #198
• + AY.15 Alias of B.1.617.2.15, Canada lineage From #198
• + AY.16 Alias of B.1.617.2.16, lineage in Kenya and multiple other countries From #198
• + AY.17 Alias of B.1.617.2.17, Ireland and Northern Ireland lineage From #198
• + AY.18 Alias of B.1.617.2.18, Canada lineage From #198
• + AY.19 Alias of B.1.617.2.19, South Africa lineage From #198
• + AY.20 Alias of B.1.617.2.20, USA and Mexico lineage From #198
• + AY.21 Alias of B.1.617.2.21, lineage predominantly in Italy and Switzerland From #198
• + AY.22 Alias of B.1.617.2.22, predominantly Portugal lineage From #198
• + AY.34.1.1 Alias of B.1.617.2.34.1.1, Brazil and Chile lineage From #255
• + AY.58 Alias of B.1.617.2.58, European lineage From #286
• + AY.63 Alias of B.1.617.2.63, Norway lineage From #286
• + AY.99 Alias of B.1.617.2.99, South Africa and Nigeria lineage From #258
• + AY.99.1 Alias of B.1.617.2.99.1, Brazil lineage From #258
• + AY.99.2 Alias of B.1.617.2.99.2, Brazil lineage From #258
• + AY.112.1 Alias of B.1.617.2.112.1, Bahrain lineage From #283
• + AY.121.1 Alias of B.1.617.2.121.1, Poland and Germany lineage From #344
• + AY.122 Alias of B.1.617.2.122, European lineage From #320
• + FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027
• + FL.18.1.1 Alias of XBB.1.9.1.18.1.1, S:Y200C, S:478R, Australia/Indonesia, from #2019
• + FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T
• + EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China From sars-cov-2-variants/lineage-proposals/#46
• + GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from https://github.com/sars-cov-2-variants/lineage-proposals/issues/345
• + GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I From sars-cov-2-variants/lineage-proposals/#308
• + XBB.1.32 Defined by ORF1a:E148D, Philippines From #1827
• + XBB.1.37 Defined by A5371G, Indonesia/Russia From #1929
• + XBF.1.1 England, S:P621S From #1651

2023-07-21

• + C.2.1 Alias of B.1.1.1.2.1, Aruba and Curacao From #32
• + C.39 Alias of B.1.1.1.39, Chile and Peru lineage From #178
• + P.1 Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586. From #77
• + B.1.1.29 Wales lineage, formerly temporarily assigned B.1.1.439 due to an error (see designation issue 50) From #50
• + N.10 Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675 From #40
• + B.1.1.316 International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation From #14
• + B.1.1.317 Russian lineage From #53
• + AW.1 Alias of B.1.1.464.1, Canadian lineage From #103
• + B.1.1.519 USA/ Mexico lineage From #111
• + BA.1.19 Alias of B.1.1.529.1.19, Europe lineage From #475
• + BA.2.2 Alias of B.1.1.529.2.2, Hong Kong lineage From #430
• + BA.2.3.11 Alias of B.1.1.529.2.3.11, Japan lineage From #605
• + CM.6.1 Alias of B.1.1.529.2.3.20.6.1, S:A348S From #1165
• + BA.2.24 Alias of B.1.1.529.2.24, Japan lineage From #600
• + BA.2.60 Alias of B.1.1.529.2.60, Peru and Chile lineage From #683
• + CA.3 Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I From #1136
• + CA.4 Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L From #1181
• + BM.1.1.1 Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S From #1043
• + CV.2 Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P From #1374
• + DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia From #2045
• + CH.3 Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch From #1375
• + BN.1.1 Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P From #1176
• + BN.1.2.1 Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N From #1238
• + FR.1.1 Alias of B.1.1.529.2.75.5.1.2.3.1.1, S:P82H, ORF1a:L293F, China From #2006
• + FR.1.2 Alias of B.1.1.529.2.75.5.1.2.3.1.2, S:R190M, China From #2028
• + BN.1.7 Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y From #1310
• + BY.1.2.1 Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P From #1184
• + BA.4.1.2 Alias of B.1.1.529.4.1.2, Austria lineage From #614
• + BA.5.1.26 Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T From #869
• + BF.7.7 Alias of B.1.1.529.5.2.1.7.7, Europe, S:D80G From #1147
• + BF.7.14.3 Alias of B.1.1.529.5.2.1.7.14.3 China, S:A626V From #1573
• + BV.2 Alias of B.1.1.529.5.2.20.2, defined by S:K444N From #1122
• + CK.2.1 Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K From #1125
• + DG.1 Alias of B.1.1.529.5.2.24.2.1.1.1, defined by S:G252S From #1288
• + DB.1 Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K From #1258
• + BA.5.2.39 Alias of B.1.1.529.5.2.39, USA, S:R346T From #1279
• + DN.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.1 UK, S:Y453F From #1548
• + EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R From #1786
• + EZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43.1 Portugal, S:S247N, S:Y248S From #1673
• + FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan From #1714
• + BE.3 Alias of B.1.1.529.5.3.1.3, USA lineage From #723
• + CQ.2 Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/US, defined by S:V445A From #1232
• + BA.5.6 Alias of B.1.1.529.5.6, USA lineage From #738
• + B.1.243.1 Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf. From #35
• + B.1.351.3 Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere From #65
• + B.1.438 Lineage circulating in multiple countries From #48
• + B.1.466.2 Indonesia From #30
• + B.1.575.1 Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I". From #64
• + AY.5.5 Alias of B.1.617.2.5.5, European lineage, formally AY.97 From #363
• + AY.20.1 Alias of B.1.617.2.20.1, Czech Republic lineage From #318
• + AY.66 Alias of B.1.617.2.66, European lineage From #271
• + AY.69 Alias of B.1.617.2.69, South Korea lineage From #260
• + AY.104 Alias of B.1.617.2.104, Sri Lanka lineage From #289
• + AY.106 Alias of B.1.617.2.106, lineage in Jordan and other countries From #287
• + AY.121 Alias of B.1.617.2.121, European lineage From #301
• + AY.123 Alias of B.1.617.2.123, Predominantly Belgium and France lineage From #306
• + AY.124 Alias of B.1.617.2.124, lineage in Portugal and other European countries From #281
• + XA Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage From #63
• + XAY.1 South Africa/US lineage with 4 AA substitutions including S:D253G From #1208
• + XAY.2.3 Denmark, ORF1a:A131V From #1896
• + XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil From #2031
• + EK.3 Alias of XBB.1.5.13.3, S:P251S, Scotland/England/Ireland From #1684
• + GF.1 Alias of XBB.1.5.24.1, S:E748V, C19524T From #1921
• + XBB.1.5.30 S:A348T, USA From #1660
• + GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam From #1966
• + XBB.1.8 Denmark, S:186insSGG, C3241T From #1455
• + EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia From #1918
• + EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada From #1950
• + FP.3 Alias of XBB.1.11.1.3, S:478R, Indonesia/Malaysia From #2021
• + XBB.1.16.1 Defined by S:T547I, from #1772
• + XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India From #1802
• + XBB.1.27 Defined by S:478R, S:A890V, Mexico/US/India From #1654
• + XBB.1.28 Defined by S:403K, Europe From #1757
• + XBB.1.31 Defined by S:453F and S:478R, Indonesia/Singapore From #1837
• + XBB.1.45.1 S:486P, A3139G, A19137G, C28291T, USA/Portugal From #1937
• + XBB.1.48 S:L455F, S:F456L (22928C), C2509T, Pakistan, from #1681
• + XBB.2.3.3 S:182N, India/USA From #1810

2023-07-20

• + HJ.1 Alias of XBB.1.5.1.1, S:E324K, C4543T, USA
• + FD.4.1 Alias of XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F
• + XBB.1.5.95 ORF1:A1851V
• + XBB.1.5.96 C28603T
• + FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C8016, C8311T
• + FL.27 Alias of XBB.1.9.1.27, ORF1a:V3747I
• + EG.4.1 Alias of XBB.1.9.2.4.1, S:I870V, N:A119S
• + EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China
• + EG.4.3 Alias of XBB.1.9.2.4.3, S:Q613H
• + FU.3.1 Alias of XBB.1.16.1.3.1, S:G184S
• + GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos
• + GY.5 Alias of XBB.1.16.2.5, G9190C
• + GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I
• + GY.7 Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos
• + XBB.1.19.1 Defined by S:E554K，Pakistan, from #1765
• + GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S
• + GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I
• + XBB.1.31.2 ORF1a:A1049V, Indonesia

2023-07-19

• + C.1 Alias of B.1.1.1.1, South Africa, from #2
• + P.1.1 Alias of B.1.1.28.1.1, European lineage in Italy and Germany, from #28
• + P.3 Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2, from #27
• + N.9 Alias of B.1.1.33.9, Brazilian lineage, from #26
• + BQ.1.1.41 Alias of B.1.1.529.5.3.1.1.1.1.1.1.41 USA, defined by S:K182I，from #1291
• + BQ.1.1.45 Alias of B.1.1.529.5.3.1.1.1.1.1.1.45 Europe, S:Y248D，from #1512
• + B.1.214.1 Congo/ France lineage, from #21
• + B.1.214.2 Lineage from Belgium with a number of key spike mutations and a 9bp spike insertion, from #20
• + B.1.214.3 France, Belgium and Mayotte lineage, from #20
• + B.1.214.4 Danish lineage, from #20
• + B.1.429 A lineage predominantly circulating in California but with exports to other countries. Characterised by the spike L452R mutation but also has spike:W152C orf1ab:D5584Y, and N:T205I, from #3
• + B.1.525 International lineage with E484K, del69-70 among other defining mutations, from #4
• + B.1.526 A lineage predominantly circulating in New York but with a few exports to other countries. Characterised by spike mutations T95I and D253G, plus others. The most frequent spike mutation pattern is L5F T95I D253G E484K D614G A701V, with a smaller fraction having S477N instead of E484K. Spike mutation E484K is present in about half of this lineage (as of 2021-02-10) - Very possible not all new additions carry T95I and D253G (someone should check this, e.g. for USA/NY-Wadsworth-21008455-01/2021 and Aruba/AW-RIVM-11403/2021), from #6
• + XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africa，from #1804
• + XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore，from #1602
• + XBB.1.11 Indonesia/Malaysia/Singapore/US, C13968A and G16377A，from #1490
• + XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P，from #1490
• + XBB.1.19.1 Defined by S:E554K，from #1765
• + FY.3.1 Alias of XBB.1.22.1.3.1, S:I210T, China，from #2009
• + XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China，from #1954
• + XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA，from #1603 and #1535
• + XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany，from #1603 and #1518

2023-07-18

• + HC.1 Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106
• + XBB.1.5.45 S:478R, C27425T, G28079T, India-GJ/MH, from #1792
• + GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil from #2093
• + XBB.1.5.89 S:478R, S:554A, Canada/Italy/France, from sars-cov-2-variants/lineage-proposals#175
• + HD.1 Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic from sars-cov-2-variants/lineage-proposals#363
• + FL.1 Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S, from #1808
• + FL.1.5 Alias of XBB.1.9.1.1.5, S:456L (T22928C), ORF1b:K2557R, from #2036
• + FL.1.7 Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia, from #1985
• + FL.4.1.1 Alias of XBB.1.9.1.4.1.1, S:K478R, ORF1a:I2286T, Indonesia/Australia, from sars-cov-2-variants/lineage-proposals#107
• + FL.4.5 Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T, from #2018
• + FL.4.7 Alias of XBB.1.9.1.4.7, S:L452R, Singapore, from sars-cov-2-variants/lineage-proposals#92
• + FL.5.1 Alias of XBB.1.9.1.5.1, S:M177T, from #2041
• + EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H
• + EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from pango-designation issue #2020
• + XBB.1.12.1 S:Q613H, S:E1202Q, Argentina/Chile/Spain from https://github.com/sars-cov-2-variants/lineage-proposals/issues/336
• + FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C from #1832
• + HF.1 XBB.1.16.13.1, S:K304N, South Korea/Japan from #2083
• + XBB.1.16.16 S:Q613H, S:S412N, India-GJ/USA/Pakistan from sars-cov-2-variants/lineage-proposals#54
• + HE.1 Alias of XBB.1.18.1.1.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico, from #2067
• + GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157
• + XBB.1.42.1 S:478R from https://github.com/sars-cov-2-variants/lineage-proposals/issues/198
• + XBB.1.49 S:346S, S:486P, on C16648A, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia from sars-cov-2-variants/lineage-proposals#208
• + HH.1.1 Alias of XBB.2.3.2.1.1, S:G181A from sars-cov-2-variants/lineage-proposals#183
• + XBB.2.3.4 S:478Q, India, from #1822
• + XBB.3.5 ORF1a:T4083M, Mozambique, from #1778

2023-07-15

• + CM.7.1 Alias of B.1.1.529.2.3.20.7.1, S:K147E, Europe, from sars-cov-2-variants/lineage-proposals#37
• + CM.7.1.1 Alias of B.1.1.529.2.3.20.7.1, S:R403K, Europe, from sars-cov-2-variants/lineage-proposals#37
• + XBB.1.5.94 S:Q613H, T25461C, France
• + EG.1.6 Alias of XBB.1.9.2.1.6, G26235T
• + XBB.1.49 S:346S, S:486P, on C16648A, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia
• + HH.1 Alias of XBB.2.3.2.1, ORF1a:T2977I, T20697C
• + HH.1.1 Alias of XBB.2.3.2.1.1, S:G181A
• + HH.2 Alias of XBB.2.3.2.2, ORF1a:D48Y
• + GJ.3 Alias of XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L
• + HG.1 Alias of XBB.2.3.8.1, S:S98F, South Korea
• + XBB.2.3.13 ORF1a:T1822I, Spain
• + XBB.2.3.14 ORF1a:Q998H

2023-07-14

• + AY.3.5 Alias of B.1.617.2.3.5, S:Q52H, USA
• + GK.1.1 Alias of XBB.1.5.70.1.1, S:T573I, Brazil
• + GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil
• + GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada
• + HF.1 XBB.1.16.13.1, S:K304N, South Korea/Japan
• + XBB.1.16.16 S:Q613H, S:S412N, India-GJ/USA/Pakistan
• + HE.1 Alias of XBB.1.18.1.1.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico
• + FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, China
• + FE.1.1.4 Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil

2023-07-13

• + XBB.1.16.15 S:K147N, S:P521S, T10756C, T14067C, on C27513T branch, from #2092

2023-07-12

• + CM.8.1.5 Alias of B.1.1.529.2.3.20.8.1.5, S:K150E, S:Y248H, N:A155V, Philippines, from sars-cov-2-variants/lineage-proposals#293
• + CJ.1.3.1 Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan, sars-cov-2-variants/lineage-proposals#287
• + CJ.1.3.2 Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea, sars-cov-2-variants/lineage-proposals#287
• + GQ.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1.1, S:G213E, New Zealand, from sars-cov-2-variants/lineage-proposals#343
• + FR.1.4 Alias of B.1.1.529.2.75.5.1.2.3.1.4, A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China, sars-cov-2-variants/lineage-proposals#256
• + EU.1.1.3 Alias of XBB.1.5.26.1.1.3, S:F157L, Europe, from sars-cov-2-variants/lineage-proposals#312
• + GK.2 Alias of XBB.1.5.70.2, S:V511I, from sars-cov-2-variants/lineage-proposals#300
• + XBB.1.5.90 S:P621S, ORF1ab:S6713L, Belgium/France, from #1849
• + XBB.1.5.92 ORF1a:T1168I, Ecuador
• + XBB.1.5.93 C337T, C19186T, USA
• + HD.1 Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic
• + FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, South Korea, from #2040
• + FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284
• + FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040
• + FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C
• + XBB.1.16.14 S:L452Q, after A11782G, India/France/Canada, from sars-cov-2-variants/lineage-proposals#329
• + XCF.1 S:F157L, USA, from sars-cov-2-variants/lineage-proposals#274

2023-07-11

• + GK.2 Alias of XBB.1.5.70.2, S:V511I
• + XBB.1.5.90 S:P621S, ORF1ab:S6713L, Belgium/France
• + XBB.1.5.91 S:P621S, USA
• + FL.2.4 Alias of XBB.1.9.1.2.4, ORF8:S67F, China
• + FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England
• + FL.26 Alias of XBB.1.9.1.26, C22264T
• + FL.26.1 Alias of XBB.1.9.1.26.1, S:493L, Sweden
• + XBB.1.16.14 S:L452Q, after A11782G, India/France/Canada
• + XCF.1 S:F157L, USA
• + XCF.2 S:S929I, Canada

2023-07-10

• + CM.8.1.5 Alias of B.1.1.529.2.3.20.8.1.5, S:K150E, S:Y248H, N:A155V, Philippines
• + CJ.1.3.1 Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan
• + CJ.1.3.2 Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea
• + GQ.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1.1, S:G213E, New Zealand
• + FK.1.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.1, S:E583D, Australia
• + FK.1.3.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2, C9391T, T13596C, Australia/Japan
• + FK.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.5, G5155A, C12439T, Australia/New Zealand
• + FR.1.4 Alias of B.1.1.529.2.75.5.1.2.3.1.4, A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China
• + CK.1.1.1 Alias of B.1.1.529.5.2.24.1.1.1, S:E654K, G6742T, C8782T, Japan
• + CK.1.3 Alias of B.1.1.529.5.2.24.1.3, Mexico, S:F157L, S:G181V
• + CK.1.4 Alias of B.1.1.529.5.2.24.1.4, C10228T, C25824T, C27741T, on C25614T branch
• + CK.1.5 Alias of B.1.1.529.5.2.24.1.5, C9118T, C15951T, ORF1a:M3733V, on C25614T branch
• + EU.1.1.3 Alias of XBB.1.5.26.1.1.3, S:F157L, Europe
• + FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V

2023-07-01

• + FL.5.1 Alias of XBB.1.9.1.5.1, S:M177T
• + FL.21 Alias of XBB.1.9.1.21, A10564T, South Korea/China
• + FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C
• + FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines
• + EG.1.4.1 Alias of XBB.1.9.2.1.4.1, S:P217L, South Korea
• + EG.1.5 Alias of XBB.1.9.2.1.5, S:S98F, Europe
• + EG.8 Alias of XBB.1.9.2.8, ORF1a:S2303F, Europe
• + GD.2 Alias of XBB.1.9.3.2, S:L212S, Philippines
• + GD.3 Alias of XBB.1.9.3.3, S:F59L, Russia
• + GY.2.1 Alias of XBB.1.16.2.2.1, S:S255F, South Korea
• + GY.3 Alias of XBB.1.16.2.3, S:M177I, Thailand
• + XBB.1.16.12 S:Q52H, South Korea
• + XBB.1.16.13 ORF1a:G519S, ORF1a:G1101D, India
• + FY.6 Alias of XBB.1.22.1.6, T2935C, ORF1a:A591V, France

2023-06-30

• + FL.1.1.1 Alias of XBB.1.9.1.1.1.1, S:A688S, Australia/Mauritius
• + FL.1.7 Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia
• + FL.4.1.1 Alias of XBB.1.9.1.4.1.1, S:K478R, ORF1a:I2286T, Indonesia/Australia
• + FL.4.4 Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia
• + FL.4.5 Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T
• + FL.4.6 Alias of XBB.1.9.1.4.6, T5098C, C13965T, Australia/China
• + FL.4.7 Alias of XBB.1.9.1.4.7, S:L452R, Singapore
• + FL.19 Alias of XBB.1.9.1.19, T2377C
• + FL.20 Alias of XBB.1.9.1.20, S:F456L (22928C), S:Q52H, Spain, from #2072
• + XBB.1.31.1 S:E554K, Indonesia

2023-06-29

• + BQ.1.1.79 Alias of B.1.1.529.5.3.1.1.1.1.1.1.79, S:Q613H, C1594T, C16362T, T24079C, Greece
• + HC.1 Alias of XBB.1.5.44.1, S:P631S, USA
• + HA.1 Alias of XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada
• + HA.2 Alias of XBB.1.5.86.2, S:P521S, Brazil
• + XBB.1.5.88 C2299T, South Africa
• + XBB.1.5.89 S:478R, S:554A, Canada/Italy/France
• + FL.13.2 Alias of XBB.1.9.1.13.2, S:K356T, China, from #2073
• + FL.18 Alias of XBB.1.9.1.18, ORF1a:T2007I
• + FL.18.1 Alias of XBB.1.9.1.18.1, N:T166I, A27507C, from #2019
• + FL.18.1.1 Alias of XBB.1.9.1.18.1.1, S:Y200C, S:478R, Australia/Indonesia
• + FL.19 Alias of XBB.1.9.1.18, T2377C
• + EG.2.1 Alias of XBB.1.9.2.2.1, S:F456L (T22930A), S:V327I, Indonesia
• + FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ
• + HB.1 Alias of XBB.1.34.2.1, S:F456L (22928C), US/China/Canada, from sars-cov-2-variants/lineage-proposals#217
• + GZ.1 Alias of XBB.2.3.4.1, S:F186L, India-GJ

2023-06-27

• + DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L455F, S:F456L, Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
• + BN.1.2.7 Alias of B.1.1.529.2.75.5.1.2.7, N:N8S, C16332T, Taiwan, from #1923
• + GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066
• + GY.2 Alias of XBB.1.16.2.2, S:T883I
• + GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China
• + GW.2 Alias of XBB.1.19.1.2, S:D936G, USA
• + GJ.1.2 Alias of XBB.2.3.3.1.2, ORF1b:V1110I, from #2059

2023-06-21

• + GU.1 Alias of XBB.1.5.41.1, S:N481S, USA/Canada
• + GV.1 Alias of XBB.1.5.48.1, S:478R
• + FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H
• + FL.4.3 Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar
• + FL.17.2 Alias of XBB.1.9.1.17.2, S:L452R, ORF7a:V104L, from sars-cov-2-variants/lineage-proposals#53
• + EG.5.1.1 Alias of XBB.1.9.2.5.1.1, found mainly in China, from pango-designation issue #2020
• + FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam

2023-06-15

• + FL.17 Alias of XBB.1.9.1.17, T3898C, C28333T
• + FL.17.1 Alias of XBB.1.9.1.17.1, S:N74H, South Korea
• + FL.17.2 Alias of XBB.1.9.1.17.2, S:L452R, from sars-cov-2-variants/lineage-proposals#53
• + XBB.1.16.11 S:P521T, India
• + GT.1 Alias of XBC.1.6.1.1, S:I105V, C28333T, Australia
• + XBC.1.6.4 ORF1a:V1117I, T20286C, Australia

2023-06-14

• + XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, Indonesia
• + FL.1.6 Alias of XBB.1.9.1.1.5, S:N481K, S:Q1208H

2023-06-13

• + FR.1.3 Alias of B.1.1.529.2.75.5.1.2.3.1.3, ORF1a:A206V, ORF1b:A517V, N:G34E, China, from #2039
• + GL.1 Alias of XAY.1.1.1.1, Europe, S:D420N, C19441T, from issue #2032
• + GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam
• + GB.2 Alias of XBB.1.5.46.2, S:478R, England/China, from #1891
• + FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia
• + FL.2.3 Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016
• + FL.16 Alias of XBB.1.9.1.16, S:D215V, C3511T, China, from #2001
• + XBB.1.16.10 N:G25D, from #1984
• + FY.1.2 Alias of XBB.1.22.1.1.2, S:T572I, ORF1b:P218L, Europe
• + FY.1.3 Alias of XBB.1.22.1.1.3, S:E583D, South Korea
• + FY.5 Alias of XBB.1.22.1.5, S:478R, Indonesia, from #1965
• + GS.1 Alias of XBB.2.3.11.1, S:213D, C4582T, C25075T, Australia, from #2023

2023-06-12

• + BR.5.1 Alias of B.1.1.529.2.75.4.5.1 ORF1a:K2029N, ORF1b:T1522I, A20289G, South Korea
• + XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil
• + EU.1.1.2 Alias of XBB.1.5.26.1.1.2, S:A1070S, Germany/Finland/Denmark/Sweden
• + XBB.1.12 Spain/Sweden/Germany, S:Y453F, ORF1a:S216F, ORF1a:A2832V
• + XBB.1.13.1 S:Q564E, S:N856K, Czechia
• + XBB.1.14.1 S:N148T, N:A211S, Russia
• + XBB.1.15 ORF1a:A540V on ORF8:G8* polytomy, Colombia, USA, Guatemala, and Mexico. Automatically inferred by https://github.com/jmcbroome/autolin.
• + XBB.1.15.1 S:486P, A19464G, C9803T, Brazil/Chile/USA
• + XBB.1.38.1 S:T883I, Russia
• + XBB.1.44 S:T747I, Russia
• + XBB.1.44.1 S:486P, ORF3a:S195F, Russia/China, from #2043
• + XBB.1.45 T21000C, USA/Singapore/Malaysia
• + XBB.1.45.1 S:486P, A3139G, A19137G, C28291T, USA/Portugal
• + XBB.1.46 ORF1a:C1114F, Singapore/Malaysia
• + XBB.1.47 ORF1a:T1761I, ORF1a:C2180Y, ORF1a:I2854V, Philippines/Singapore/Japan
• + XBB.1.47.1 S:486P, S:A260V, S:V1122G, Japan/USA/Australia/Germany
• + XBB.1.48 S:L455F, S:F456L (22928C), C2509T, Pakistan
• + XBB.2.6.3 S:T883I, C25587T, Peru
• + XBB.2.11 C18129T
• + XBB.2.11.1 C4084T, C9559T, T16521C, USA
• + XBB.2.12 S:Q613H (G23401C), C4090T, T24194C, India
• + XCG Recombinant lineage of BA.5.2* and XBB.1, Mexico

2023-06-11

• + DV.6.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Europe
• + DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia
• + DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038
• + DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden
• + GQ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1, S:486P, ORF1a:H1545Q, ORF1b:V1520L, Australia/New Zealand, from #1872
• + GP.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.1, S:Q52H, ORF7a:T28I, Europe
• + GP.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.2, ORF6:S41F, T13450C, Europe
• + GP.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.3, T5218C, A16878G, A26519G, C29236T, Ireland
• + FK.1.2.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.2, ORF1a:D139N, ORF1a:R226K, ORF1a:Q556K, ORF3a:T64N, T11737C, AUS/NZ
• + CH.1.1.29 Alias of B.1.1.529.2.75.3.4.1.1.1.1.29, S:613H, ORF1a:P371S, Europe/Canada
• + CH.1.1.30 Alias of B.1.1.529.2.75.3.4.1.1.1.1.30, ORF1a:Y2968H, C17913T, Germany/Netherlands/Austria
• + BR.5.1 Alias of B.1.1.529.2.75.4.5.1 ORF1a:K2029N, ORF1b:T5923I, A20289G, South Korea
• + FR.1.3 Alias of B.1.1.529.2.75.5.1.2.3.1.2, ORF1a:A206V, ORF1b:A517V, N:G34E, China, from #2039
• + BN.1.3.12 Alias of B.1.1.529.2.75.5.1.3.12 C14358T, T22672C, South Korea/Thailand/Germany
• + EN.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1.1 S:M153I, France
• + BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L, Reunion
• + BQ.1.1.76 Alias of B.1.1.529.5.3.1.1.1.1.1.1.76, C15180T, Slovenia/Austria
• + BQ.1.1.77 Alias of B.1.1.529.5.3.1.1.1.1.1.1.77, C12853T, ORF1b:A1428V, USA/France
• + BQ.1.1.78 Alias of B.1.1.529.5.3.1.1.1.1.1.1.78, ORF1a:M315I, ORF1b:P1953L, Japan
• + GN.1 Alias of XBB.1.5.73.1, S:F456L (22928C), Peru/Costa Rica
• + XBB.1.5.82 S:K444R, Sweden/Reunion
• + XBB.1.5.83 A10624G, South Africa
• + XBB.1.5.84 S:M177I, South Africa
• + XBB.1.5.85 S:L176F, S:478R, Trinidad and Tobago/Hong Kong
• + XBB.1.5.86 ORF1a:G2868S, Brazil
• + GM.1 Alias of XBB.2.3.6.1, S:P621S, Singapore
• + GM.2 Alias of XBB.2.3.6.2, S:G181R, Singapore
• + XBC.1.1.2 S:L244F, ORF7b:L32F, Australia
• + XBC.1.6 S:346S, S:M452R, found in Australia, from pango-designation issue #1755
• + XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong
• + XBL.3.1 S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand
• + XCF Recombinant lineage of XBB* and FE.1 (XBB.1.18.1.1), possibly South America, from lineage-proposals#2

2023-06-10

• + GL.1 Alias of XAY.1.1.1.1 Europe, S:D420N, C19441T, from issue #2032
• + FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, South Korea
• + EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England
• + FE.1.1.1 Alias of XBB.1.18.1.1.1.1, ORF1a:T999I, North America
• + FE.1.1.2 Alias of XBB.1.18.1.1.1.2, S:K1086R, Brazil/USA
• + XBB.1.41.1 S:478R, France
• + GJ.1.1 Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I
• + GJ.2 Alias of XBB.2.3.3.2, S:I1114S, Europe
• + XCE Recombinant lineage of BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from lineage-proposals#123

2023-06-08

• + XBB.8.2 S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995
• + XCD Recombinant lineage of XBB.1 and BQ.1.1.25, with S:R214H, S:478I, Indonesia, from #2042

2023-06-07

• + GK.1 Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025
• + FL.1.5 Alias of XBB.1.9.1.1.5, S:456L (T22928C), ORF1b:K2557R, from #1985 and #2036
• + FL.1.5.1 Alias of XBB.1.9.1.1.5.1, S:478R, from #2036
• + XBB.1.34 S:486P,S:681R, N:A50V, Uganda/Sudan, from pango-designation issue #1621
• + XBB.1.34.1 S:E554K, ORF1b:P970L
• + XBB.1.34.2 S:K182I, ORF8:C90F, ORF1a:G989C
• + GH.1 Alias of XBB.2.6.1.1, ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869

2023-06-03

• + GJ.1 Alias of XBB.2.3.3.1, found mainly in China and USA, from pango-designation issue #2005

2023-06-02

• + FD.2.1 Alias of XBB.1.5.15.2.1, ORF1a:D3022N, Peru
• + XBB.1.5.73 T28271C, USA/Peru
• + XBB.1.5.74 S:K462R, ORF1b:V728I, Peru, from #1998
• + XBB.1.5.75 C3695T, Peru/France
• + XBB.1.5.76 ORF1a:T3696A, Chile
• + XBB.1.5.77 T18732C, Colombia/USA
• + XBB.1.5.78 ORF1a:N460D, Mexico
• + XBB.1.5.79 N:Q260L, Mexico/USA
• + XBB.1.5.80 A16812G, C21812T, USA/Romania
• + XBB.1.5.81 S:478R, G4657A, South Africa
• + XBB.2.3.12 S:S494P, from #2029
• + XBB.2.6.1 S:P521S, Peru, from #1869
• + GH.1 Alias of XBB.2.6.1, ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869
• + XBB.2.6.2 S:T19L, Peru

2023-06-01

• + FR.1.1 Alias of B.1.1.529.2.75.5.1.2.3.1.1, S:P82H, ORF1a:L293F, China
• + FR.1.2 Alias of B.1.1.529.2.75.5.1.2.3.1.2, S:R190M, China
• + XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China
• + XBB.1.43 G11071A, Indonesia, from #2015
• + XBB.1.43.1 S:486P, ORF1a:A2621V, A20713C, from #2015

2023-05-31

• + CM.7.1 Alias of B.1.1.529.2.3.20.7.1, S:K147E, Europe
• + XBB.1.5.10 S:F456L (T22928C), USA-NC from #1614
• + FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L (T22928C), Canada-QC
• + XBB.1.5.59 S:F456L (T22928C), ORF1a:S2822P, England, from #1949
• + XBB.1.5.70 S:L455F, S:F456L (T22928C), ORF1a:A4068S, Brazil, from #1982
• + XBB.1.5.72 S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America
• + FL.15 Alias of XBB.1.9.1.15, S:F456L (T22928C), ORF1a:E637K, Vietnam/China/South Korea, from #1994
• + EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia
• + EG.6 Alias of XBB.1.9.2.6, C1684T, Israel
• + EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada
• + XBB.1.9.7 S:486P, S:478R, ORF1a:P1018T, Indonesia
• + FP.1 Alias of XBB.1.11.1.1, A6616G, C21642T, following ORF1a:T2016I, Singapore, from #1847
• + FP.2 Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore
• + FP.2.1 Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia
• + FP.3 Alias of XBB.1.11.1.3, S:478R, Indonesia/Malaysia
• + FP.4 Alias of XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan
• + XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China
• + XBB.1.16.9 S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA
• + FE.1 Alias of XBB.1.18.1.1, S:F456L (T22928C), Brazil/Chile
• + XBB.2.10 S:Q52H, Latvia/Poland

2023-05-30

• + FL.15 Alias of XBB.1.9.1.15, found mainly in China and South Korea, from pango-designation issue #1994

2023-05-28

• + FR.1 Alias of B.1.1.529.2.75.5.1.2.3.1, S:K187E, N:T366I, Japan/Taiwan/USA, from #1814

2023-05-27

• + XBB.1.16.8 S:T732I after C28531T, India/USA/China/Australia

2023-05-26

• + XBB.1.5.71 S:V511I, Spain
• + XBB.1.16.7 S:T732I after T12214C, Singapore/Japan/SouthKorea

2023-05-25

• + FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, ORF1a:A1060T, on C27804T>ORF1b:L2580I>N:G34E branch, New Zealand, from #1881
• + FK.1.2.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.1, ORF1a:T891I, Germany/Denmark/Finland/Austria
• + FK.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3, ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia
• + FK.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4, S:S704L, on C27804>ORF7a:Y40H branch, Australia
• + GF.1 Alias of XBB.1.5.24.1, S:E748V, C19524T
• + EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H, China
• + EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F
• + FY.1.1 Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan
• + FY.3.1 Alias of XBB.1.22.1.3.1, S:I210T, China
• + FY.4.1 Alias of XBB.1.22.1.4.1, S:S494P, Kenya
• + XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997

2023-05-24

• + GF.1 Alias of XBB.1.5.24.1 S:E748V, C19524T
• + GG.1 Alias of XBB.1.5.38.1 S:478R, Europe, from sars-cov-2-variants/lineage-proposals#48
• + FL.1.4 Alias of XBB.1.9.1.1.4, S:478R, S:Q1208H, Vietnam, from issue #1985
• + FL.4.1 Alias of XBB.1.9.1.4.1, S:N450I
• + FL.4.2 Alias of XBB.1.9.1.4.2, ORF1a:T951I, China
• + FL.13 Alias of XBB.1.9.1.13, G4354A
• + FL.13.1 Alias of XBB.1.9.1.13.1, S:A411S, ORF1a:P80S, China, from #1996
• + FL.14 Alias of XBB.1.9.1.14, S:V1122M, C29311T, C22978T, Russia/Finland

2023-05-23

• + XBB.1.5.70 Defined by ORF1a:A4068S S:L455F and S:F456L, found mainly in Brazil and USA, from pango-designation issue #1982

2023-05-12

• + XBB.2.9 Defined by ORF1a:V2027I and S:F486P, found mainly in Russia, from pango-designation issue #1877

2023-05-10

• + XBB.1.5.64 G8137A, C29708T, South Korea
• + FL.9 Alias of XBB.1.9.1.9, C23707T, T29691C, England
• + FL.11 Alias of XBB.1.9.1.11, ORF1a:L349F, France/French Guiana, from #1947

2023-05-09

• + FL.12 Alias of XBB.1.9.1.12, ORF1a:C2210F
• + XBB.1.32.1 S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908

2023-05-08

• + CH.1.1.28 Alias of B.1.1.529.2.75.3.4.1.1.1.1.28, ORF1b:V1092F, Europe
• + FR.1 Alias of B.1.1.529.2.75.5.1.2.3.1, S:K187E, S:T366I, Japan/Taiwan/USA, from #1814
• + FR.2 Alias of B.1.1.529.2.75.5.1.2.3.2, ORF1a:Y1920H, ORF1b:I1799S, South Korea
• + BN.1.2.5 Alias of B.1.1.529.2.75.5.1.2.5, C3241T, C16833T, G22225A, South Korea
• + BN.1.2.6 Alias of B.1.1.529.2.75.5.1.2.6, ORF1b:A1326S, South Korea
• + EJ.3 Alias of B.1.1.529.2.75.5.1.3.8.3, C2509T, C3241T, C17004T, South Korea
• + BN.1.3.11 Alias of B.1.1.529.2.75.5.1.3.11 ORF1a:T568I, ORF1a:V1211F, South Korea
• + DN.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.2, ORF1b:D2351N, USA
• + DN.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3, ORF1a:V1025L
• + DN.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3.1, S:K182E
• + BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada
• + BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain
• + BQ.1.3.2 Alias of B.1.1.529.5.3.1.1.1.1.1.3.2, ORF1a:L1853F, USA
• + BQ.1.33 Alias of B.1.1.529.5.3.1.1.1.1.1.33 S:F157L, S:K147I
• + GC.1 Alias of XBB.1.5.21.1, S:T323I, Spain
• + GC.2 Alias of XBB.1.5.21.2, S:A352S, USA
• + XBB.1.5.69 ORF1a:V2943I,C22513T, USA
• + FL.1.1 Alias of XBB.1.9.1.1.1, ORF1b:Q2635P, USA/Australia
• + FL.1.2 Alias of XBB.1.9.1.1.2, ORF1a:T4311I, South Korea/Italy/Spain
• + FL.1.3 Alias of XBB.1.9.1.1.3, ORF1a:T1881I, ORF1b:M606I, South Korea
• + FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England
• + FL.3.2 Alias of XBB.1.9.1.3.2, T8830C, England/Spain
• + FL.3.3 Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England
• + FL.3.4 Alias of XBB.1.9.1.3.4, G10642C, T26232C, England
• + FL.8 Alias of XBB.1.9.1.8, ORF3a:I62F, Europe
• + FL.9 Alias of XBB.1.9.1.9, T29691C, England
• + FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y
• + FL.11 Alias of XBB.1.9.1.11, ORF1a:L394F, France/French Guiana, from #1947
• + EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H
• + GD.1 Alias of XBB.1.9.3.1, S:Y453F, Mexico/USA, from #1897
• + XBB.1.16.6 S:F456L, A12397G, USA/Canada/China
• + XBB.1.24 Defined by S:F486P, on T13704C branch, South East Asia from #1654
• + XBB.1.24.1 S:L518Q, Singapore
• + XBB.1.24.2 S:R158S, after ORF1a:K261N, N:A35T, Singapore/Malaysia
• + XBB.1.24.3 S:S256L, after ORF1a:K261N, Malaysia/Japan
• + XBB.1.38 Defined by S:T732I, Russia
• + XBB.1.39 ORF1a:V2866M, Singapore/Malaysia
• + XBB.1.40 S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia
• + XBB.2.3.1 S:D80Y, England/Sweden/India, #1775
• + XBB.2.3.2 S:G184V, ORF1a:R2159W, India, from #1776
• + XBB.2.3.3 S:182N, India/USA
• + XBB.2.3.4 S:478Q, India
• + XBB.2.3.5 S:K478N, found mainly in USA and India, from pango-designation issue #1846
• + XBB.2.3.6 N:T166I, mainly Singapore
• + XBB.2.3.7 ORF1a:T4087I
• + XBB.2.3.8 C2013T, T16389C, S:478R, Singapore/SouthKorea from #1866
• + XBB.2.3.9 S:S98F, C18744T, C19200T, India
• + XBB.2.3.10 T5947C, India
• + GE.1 Alias of XBB.2.3.10.1, S:K478R, from #1866
• + XBB.2.3.11 S:K478R, India, from #1866
• + XBB.3.5 ORF1a:T4083M, Mozambique

2023-05-07

• + DV.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C
• + CH.1.1.24 Alias of B.1.1.529.2.75.3.4.1.1.1.1.24, T931C, T6676C
• + CH.1.1.25 Alias of B.1.1.529.2.75.3.4.1.1.1.1.25, ORF1a:S330L, ORF1a:P4197S, US
• + CH.1.1.26 Alias of B.1.1.529.2.75.3.4.1.1.1.1.26, C29296T, Japan
• + CH.1.1.27 Alias of B.1.1.529.2.75.3.4.1.1.1.1.27, ORF1a:S538L, New Zealand
• + FD.4 Alias of XBB.1.5.15.4, ORF1a:L4191F, USA
• + GB.1 Alias of XBB.1.5.46.1, S:L518V, France, from #1969
• + XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, Guinea, from #1860
• + XBB.1.5.59 S:F456L, ORF1a:S2822P, England, from #1949
• + XBB.1.5.60 S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany
• + XBB.1.5.61 T11536C, USA
• + XBB.1.5.62 C29095T
• + XBB.1.5.63 C346T, Germany/Mauritius
• + XBB.1.5.64 C29708T
• + XBB.1.5.65 C583T, Germany
• + XBB.1.5.66 ORF1a:G519S, USA
• + XBB.1.5.67 C21691T, USA
• + XBB.1.5.68 S:P521T, ORF3a:L71I, C18501T, USA
• + FL.7 Alias of XBB.1.9.1.7, S:T51I
• + XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983
• + GA.1 Alias of XBB.1.17.1.1, ORF1a:G728C
• + GA.2 Alias of XBB.1.17.1.2, ORF3a:I179F, T6640C, Africa
• + GA.3 Alias of XBB.1.17.1.3, ORF1b:A186V, Ghana
• + XBB.1.37 Defined by A5371G, Indonesia/Russia
• + XBB.1.37.1 Defined by S:486P, A1846G, G7459T, T27285C, Russia/South Korea, from #1929

2023-05-06

• + FZ.1 Alias of XBB.1.5.47.1, S:E583D, England/Scotland
• + FZ.1.1 Alias of XBB.1.5.47.1.1, S:L858I, England/Scotland
• + FZ.2 Alias of XBB.1.5.47.2, S:Q836R, USA
• + XBB.1.5.56 S:A852S, USA
• + XBB.1.5.57 A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, #1973
• + XBB.1.16.4 Defined by S:T678I, India, from #1903
• + FE.1.1 Alias of XBB.1.18.1.1.1, ORF8:S67F, T4579A
• + FE.1.2 Alias of XBB.1.18.1.1.2, A5488G
• + XBL Recombinant lineage of XBB.1.5.57-BA.2.75* (short segment from ~1k-~5k)-XBB.1.5.57, Malaysia, from issue #1532

2023-05-05

• + EG.1.2 Alias of XBB.1.9.2.1.2, ORF7b:H42Y, mostly Austria, from #1711
• + FY.1 Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N
• + FY.2 Alias of XBB.1.22.1.2, S:I197T, ORF1b:S997P, Indonesia, from #1859
• + FY.3 Alias of XBB.1.22.1.3, ORF1a:E750K, C23191T, China
• + FY.4 Alias of XBB.1.22.1.4, S:Y451H, A8374G, C25517T, Kenya, from #1979
• + XBB.2.3.9 Defined by C18744T, C19200T, S:S98F, India
• + XBB.2.3.10 Defined by T5947C, India

2023-05-04

• + FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan
• + XBB.1.5.55 ORF1a:T3356I, USA/Canada
• + FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria

2023-05-02

• + EK.4 Alias of XBB.1.5.13.4, S:Q675K, USA/France
• + XBB.1.5.54 C14358T,C20016T,C29311T, Central/Eastern Europe
• + FW.1 Alias of XBB.1.28.1.1, S:A701V, Indonesia, Europe
• + FW.2 Alias of XBB.1.28.1.2, ORF1a:G2258C, France
• + XBB.2.3.8 Defined by C2013T, T16389C, S:478R, Singapore/SouthKorea from #1866

2023-04-30

• + BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1, found mainly in Japan, SouthKorea and Mongolia, from pango-designation issue #1392
• + BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, found mainly in UK, from pango-designation issue #1861

2023-04-27

• + FV.1 Alias of B.1.1.529.2.3.20.8.1.1.1, S:R346T, M:E11Q, Singapore/SouthKorea/Japan/Philippines/HK
• + XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africa
• + XBB.1.9.6 S:403K, S:570T, Indonesia

2023-04-26

• + EU.1 Alias of XBB.1.5.26.1, S:P521S, Germany/Netherlands, from #1688
• + EU.1.1 Alias of XBB.1.5.26.1.1, S:I410V, Germany/Netherlands, from #1688
• + EU.1.1.1 Alias of XBB.1.5.26.1.1.1, C21646T, Germany
• + XBB.1.5.47 C1912T, USA/England
• + XBB.1.5.48 A24730T, USA/Canada/England
• + XBB.1.5.49 T6886C, USA
• + XBB.1.5.50 S:621S, N:T49I, USA/Canada
• + XBB.1.5.51 ORF1a:D3009A, USA
• + XBB.1.5.52 C3589T

2023-04-25

• + XBB.1.36 Defined by S:S490P, found mainly in Malaysia, Indonesia and Singapore, from pango-designation issue #1781
• + XBB.3.4 Defined by S:E990D
• + XBB.8.1 S:486P, Malaysia
• + XBB.9 N:T49I after ORF1a:D82G, Philippines

2023-04-24

• + FK.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2, ORF1a:L384F, ORF1a:R550H
• + XBB.1.5.43 C18501T, Singapore/Malaysia/Indonesia
• + XBB.1.5.44 S:K356T, S:T572I, USA, from #1907
• + XBB.1.5.45 S:478R, C27425T, G28079T, India-GJ/MH
• + XBB.1.5.46 C5770T, C15279T, Germany/France
• + XBB.1.35 ORF1a:V89A, Indonesia
• + XBC.1.6.1 ORF8:P36L, Australia
• + XBC.1.6.2 ORF1a:D827N, Australia
• + XBC.1.6.3 N:A173V, Australia
• + XCC Recombinant lineage of CH.1.1.1 and XBB.1.9.1, predominantly Pakistan, Australia, from #1876

2023-04-23

• + FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2, ORF1a:L384F, ORF1a:R550H
• + XAY.1.1.2 Germany/South Africa, C14838T
• + XAY.1.1.3 Germany/China/Luxembourg, C6040T, C8290T, T15153C
• + XAY.2.3 Denmark, ORF1a:A131V
• + FT.1 Alias of XBB.1.5.39.1, S:I197V, Canada, #1745
• + XBB.1.5.41 S:V772I, S:P521T, USA, from #1941
• + XBB.1.5.42 S:E281D, Asia/USA, from #1933
• + FL.2.1 Alias of XBB.1.9.1.2.1, C10228T, Germany, global
• + FL.2.2 Alias of XBB.1.9.1.2.2, S:T478R, Indonesia, from #1927
• + FL.3 Alias of XBB.1.9.1.3, T1753C, England
• + FL.4 Alias of XBB.1.9.1.4, ORF1b:V1092F
• + FL.5 Alias of XBB.1.9.1.5, N:T362I
• + EG.1.2 Alias of XBB.1.9.2.1.2, ORF7b:H42Y, mostly Austria
• + EG.1.3 Alias of XBB.1.9.2.1.3, C3784T, A6613G, Europe
• + EG.1.4 Alias of XBB.1.9.2.1.4, ORF1a:S2500F, Europe
• + EG.3 Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch
• + EG.4 Alias of XBB.1.9.2.4, C28651T
• + EG.5 Alias of XBB.1.9.2.5, S:F456L, ORF1a:A690V, ORF1a:A3143V, Indonesia
• + FU.1 Alias of XBB.1.16.1.1, T3802C
• + FU.2 Alias of XBB.1.16.1.2, C8692T
• + XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India
• + XBB.1.16.3 Defined by A2893C, India
• + XCC Recombinant lineage of CH.1.1.1 and XBB.1.9.1, predominantly Pakistan, Austrlia, from #1876

2023-04-22

• + FS.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12.1, found mainly in Denmark, from pango-designation issue #1816
• + FR.1 Alias of B.1.1.529.2.75.5.1.2.3.1, found mainly in Japan, Taiwan and USA, from pango-designation issue #1814

2023-04-21

• + XBB.1.34 Defined by S:681R, found mainly in USA and UK, from pango-designation issue #1621

2023-04-20

• + XBB.2.3.6 Defined by N:T166I, mainly Singapore
• + XBB.2.3.7 Defined by ORF1a:T4087I
• + XBL.1 S:V635I, T2461C
• + XBL.2 A1393G
• + XBL.3 C11824T, G14400T

2023-04-19

• + XBB.1.33 Defined by S:A376T, found mainly in Italy, from pango-designation issue #1879

2023-04-18

• + EQ.1 Alias of B.1.1.529.5.1.33.1 S:Q14H, found mainly in Germany, France, Japan and Denmark, from pango-designation issue #1522
• + FQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39.1, found mainly in Sweden, France and Australia, from pango-designation issue #1797
• + XCB Recombinant lineage of BF.31.1 and BQ.1.10*, predominantly in Chile, from pango-designation issue #1668

2023-04-15

• + XCB Recombinant lineage of BF.31.1and BQ.1.10*, predominantly in Chile, from pango-designation issue #1668

2023-04-14

• + FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, found mainly in New Zealand and Australia, from pango-designation issue #1881

2023-04-13

• + XBB.2.3.5 Defined by S:K478N, found mainly in USA and India, from pango-designation issue #1846

2023-04-12

• + CH.1.1.23 Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from pango-designation issue #1862
• + BF.42 Alias of B.1.1.529.5.2.1.42, found in Japan, from pango-designation issue #1855
• + FP.1 Alias of XBB.1.11.1.1, found mainly in Singapore, from pango-designation issue #1847

2023-04-10

• + XBF.1 Australia/England, S:S939F
• + XBF.1.1 England, S:P621S
• + XBF.10 Australia, S:M153I

2023-04-08

• + CJ.1.2 Alias of B.1.1.529.2.75.3.1.1.1.1.2, ORF1a:L2609F, Sweden/France/England
• + CJ.1.3 Alias of B.1.1.529.2.75.3.1.1.1.1.3, A261G reversion, G4960A, C14790T, South Korea
• + EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France
• + XBB.1.28.1 Defined by S:356T, Indonesia, global

2023-04-06

• + BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740
• + BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from pango-designation issue #1817
• + FN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817

2023-04-05

• + FM.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.1 S:613H, England
• + FM.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.2 S:946R, Germany
• + XBB.1.5.40 S:478I, USA
• + FL.1 Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S
• + FL.2 Alias of XBB.1.9.1.2, T4579A
• + EG.2 Alias of XBB.1.9.2.2, S:478R, Indonesia
• + XBB.1.31 Defined by S:453F and S:478R, Indonesia/Singapore
• + XBB.1.32 Defined by ORF1a:E148D, Philippines
• + XBB.2.3.3 Defined by S:182N, India/USA
• + XBB.2.3.4 Defined by S:478Q, India

2023-04-04

• + BQ.1.1.73 B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740
• + XCA Recombinant lineage of BA.2.75 and BQ.1, predominantly in UK, from pango-designation issue #1752

2023-04-01

• + FK.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1, found mainly in New Zealand and Australia, from pango-designation issue #1718

2023-03-31

• + BN.1.3.10 Alias of B.1.1.529.2.75.5.1.3.10 ORF1a:Q1918R, C13608T, Asia/Oceania

2023-03-30

• + FJ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19.1, ORF1a:A1204V, England
• + CH.1.1.22 Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from pango-designation issue #1670

2023-03-29

• + CH.1.1.21 Alias of B.1.1.529.2.75.3.4.1.1.1.1.21, England, S:N481Y, from #1799
• + XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA
• + XBB.2.3.2 Defined by S:G184V, ORF1a:R2159W, India, from #1776
• + XBZ Recombinant lineage of BA.5.2* and EF.1.3, predominantly in Denmark, Germany and Austria, from pango-designation issue #1666

2023-03-28

• + FD.2 Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600
• + FH.1 Alias of XBB.1.5.17.1, S:T883I, C4633T, USA
• + XBB.1.5.35 S:N978S, USA, from #1699
• + XBB.1.5.37 S:K1045R, Europe
• + XBB.1.5.38 S:I666V, ORF1a:T403I
• + XBB.1.5.39 ORF1a:M3684T, USA/Canada

2023-03-25

• + CM.8.1.3 Alias of B.1.1.529.2.3.20.8.1.3, USA, S:Y1272H
• + CM.8.1.4 Alias of B.1.1.529.2.3.20.8.1.4, ORF1b:N1790D, Philippines, from #1554
• + BL.1.5 Alias of B.1.1.529.2.75.1.1.5, Japan, S:A475V
• + CH.1.1.18 Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T, related to #1747
• + CH.1.1.19 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19, C2773T, Europe
• + CH.1.1.20 Alias of B.1.1.529.2.75.3.4.1.1.1.1.20, England, T299I, R403K, D1165G, from #1736
• + BN.1.3.9 Alias of B.1.1.529.2.75.5.1.3.9 S:V83F, #1748
• + BF.5.5 Alias of B.1.1.529.5.2.1.5.5 Europe, S:K147N
• + DN.1.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.3 S:S704L, UK
• + DN.1.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.4 S:N481S, UK
• + BQ.1.26.2 Alias of B.1.1.529.5.3.1.1.1.1.1.26.2, Europe, S:F157L
• + FG.1 Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751
• + FG.2 Alias of XBB.1.5.16.2, S:D178N, USA/Europe
• + FG.3 Alias of XBB.1.5.16.3, S:I934V, England/Wales
• + XBB.1.5.31 T24976C, USA
• + XBB.1.5.32 ORF1a:T2823I, USA
• + XBB.1.5.33 G370A, USA
• + XBB.1.5.34 ORF1a:T1754I, USA
• + XBB.1.5.35 S:N978S, USA, from ##1699
• + XBB.1.5.36 C9442T, USA
• + XBB.1.28 Defined by S:403K, Europe
• + XBB.1.29 Defined by ORF1a:L3829F, S:A292S, Europe
• + XBB.1.30 Defined by ORF1b:K2557R, South East Asia
• + XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA, from #1776
• + XBB.2.3.1 Defined by S:D80Y, England/Sweden/India, #1775
• + XBB.2.3.2 Defined by S:G184V, ORF1a:R2159W, India
• + XBB.2.7.1 S:Y453F, S:K478Q, Singapore, #1725
• + XBB.2.8 C6968T, Brunei
• + XBF.9 Europe, ORF1b:S1003G

2023-03-24

• + BN.1.3.9 Alias of B.1.1.529.2.75.5.1.3.9 S:V83F
• + CP.8.1 Alias of B.1.1.529.5.2.6.8.1 found mainly in the Australia and Japan, from pango-designation issue #1627

2023-03-23

• + FF.1 Alias of B.1.1.529.5.3.1.1.1.1.1.8.2.1 found mainly in the UK, from pango-designation issue #1523

2023-03-22

• + DR.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, S:M153I, found mainly in USA, from pango-designation issue #1420
• + DR.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.2, S:478R, USA
• + FA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.1, S:K478R, USA
• + FA.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.2, S:T323I, Denmark
• + EY.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1.1, Brazil/USA, S:Q613H
• + EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R
• + EW.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.2 S:A701V
• + EW.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.3 S:A348S, South Africa
• + EZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43.1 Portugal, S:S247N, S:Y248S
• + EV.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England
• + BQ.1.1.72 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A
• + FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia
• + FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan
• + FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia
• + BE.6 Alias of B.1.1.529.5.3.1.6, France, S:R346S, on 28693C, 22624C
• + BE.7 Alias of B.1.1.529.5.3.1.7, South Africa, S:R346T on 28693C, 22624C, #1280
• + BE.8 Alias of B.1.1.529.5.3.1.8, South Africa, S:R346T on 28693C, #1278
• + BE.9 Alias of B.1.1.529.5.3.1.9, S:144-, S:444T, S:460K, on 28693C, Brazil, from pango-designation issue #1302
• + BE.11 Alias of B.1.1.529.5.3.1.11, T3049C, on 28693C
• + BE.12 Alias of B.1.1.529.5.3.1.12, C10834T, T18975C, A29359G, on 28693C
• + BE.13 Alias of B.1.1.529.5.3.1.13, S:346T, S:478R, on 28693C, South Africa
• + EK.2.1 Alias of XBB.1.5.13.2.1, S:478R, USA/Canada/Scotland
• + EK.3 Alias of XBB.1.5.13.3, S:P251S, Scotland/England/Ireland
• + FD.1 Alias of XBB.1.5.15.1, ORF7b:E3*, England/Canada
• + FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L, Canada-QC
• + XBB.1.5.27 S:K478R, on T11431C branch, USA
• + XBB.1.5.28 S:K478R, on 17124C polytomy, USA
• + XBB.1.5.29 S:A348V, USA-NE
• + XBB.1.5.30 S:A348T, USA
• + XBB.1.16 Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, from pango-designation issue #1723
• + XBB.1.16.1 Defined by S:T547I
• + FE.1 Alias of XBB.1.18.1.1, S:F456L, Brazil/Chile
• + XBB.1.27 Defined by S:478R, S:A890V, Mexico/US/India

2023-03-21

• + DV.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.5, England/Australia, ORF1a:R24C, S:613H, from #1753
• + CH.1.1.16 Alias of B.1.1.529.2.75.3.4.1.1.1.1.16, S:613H, ORF3a:S26L, on C193T branch, Germany/Sweden, from #1753
• + CH.1.1.17 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17, M:S212G, on C21811T branch, from #1753
• + XBB.1.23 Defined by E:S68F, on 28297C branch, South East Asia
• + XBB.1.24 Defined by S:F486P, on T13704C branch, from #1654
• + XBB.1.25 Defined by C673T, G487T, on 28297C branch
• + XBB.1.26 Defined by T10663C on 28297C branch, Canada

2023-03-20

• + DV.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1.1, defined by S:Q613H and N:T265I, from #1720
• + CP.8 Alias of B.1.1.529.5.2.6.8 ORF1b:D1939G, C15240T, A15486G, C28651T, related to #1627
• + XBB.1.5.26 920T, USA, from #1688
• + EU.1 Alias of XBB.1.5.26.1, S:P521S, Germany/Netherlands, from #1688
• + EU.1.1 Alias of XBB.1.5.26.1.1, S:I410V, Germany/Netherlands, from #1688
• + XBB.1.5.27 S:F486P, on T13704C branch, from #1654
• + XBB.1.9.4 28603T, Europe
• + XBB.1.9.5 ORF1a:D629E, Russia
• + XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680
• + XBB.1.19.1 Defined by S:E554K
• + XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia
• + XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646
• + XBB.1.22 Defined by S:486P, on 28297C branch, from #1704
• + XBB.1.22.1 Defined by S:Y200C, from #1704
• + XBB.1.22.2 Defined by ORF1a:L3829F, C15237T
• + XBB.1.23 Defined by E:S68F, South East Asia
• + XBB.2.7 ORF1a:R3662H, parent of lineage proposed in #1725
• + XBC.2.1 S:K444T, Australia, from #1538
• + XBF.8.1 Australia, S:P621S, from #1651
• + XBJ.1 A16011G, from #1591
• + XBJ.1.1 S:G485D, N:R195K, from #1591
• + XBJ.2 C22006T, Europe
• + XBJ.3 ORF1a:K2928N, Europe
• + XBJ.4 S:G485D, Japan/Thailand
• + XBU Recombinant lineage of BA.2.75.3, BQ.1, BA.2.75.3, from issue #1425
• + XBV Recombinant lineage of CR.1, XBB.1, from issue #1460
• + XBW Recombinant lineage of XBB.1.5, BQ.1.14, from issue #1505
• + XBY Recombinant lineage of BR.2.1, XBF, from issue #1669

2023-03-19

• + XBB.1.5.22 ORF1a:E1498A, pre T17124C, Australia
• + XBB.1.5.23 ORF1a:P4220L, pre T17124C
• + XBB.1.5.24 C2710T, pre T17124C
• + XBB.1.5.25 S:97T on T10204C branch, South Africa, from #1643
• + XBB.1.17 Defined by T27995C and ORF1a:L469F, from issue #1712
• + XBB.1.17.1 Defined by S:215H, S:S486P, from issue #1712
• + XBB.1.17.2 Defined by ORF1a:A698S, Russia, from issue #1712
• + XBB.1.18 Defined by A8001G, Brazil
• + XBB.1.18.1 Defined by S:F486P, Brazil

2023-03-17

• + ET.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, from pango-designation issue #1732
• + XBB Recombinant lineage of BJ.1 and BM.1.1.1 with breakpoint in S1, found in USA and Singapore, from issue #1058
• + XBC.1.6 found in Australia, from pango-designation issue #1755

2023-03-16

• + ER.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from pango-designation issue #1715

2023-03-12

• + BQ.1.32 Alias of B.1.1.529.5.3.1.1.1.1.1.32 found mainly in USA and Mexico, from pango-designation issue #1731

2023-03-11

• + BF.7.4.3 Alias of B.1.1.529.5.2.1.7.4.3, Japan, S:F157L, N:A90S, from #1743

2023-03-10

• + CH.1.1.15 Alias of B.1.1.529.2.75.3.4.1.1.1.1.15, found mainly in Lithuania, Germany and UK, from pango-designation issue #1726
• + ES.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.65.1 found mainly in Canada and USA, from pango-designation issue #1722

2023-03-08

• + ER.1.1 B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from pango-designation issue #1715

2023-03-06

• + ER.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1 found mainly in UK, from pango-designation issue #1492
• + XBB.1.16 Defined by S:E180V, found in India, USA, Singapore, and Europe, from pango-designation issue #1723

2023-03-04

• + BQ.1.1.71 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from pango-designation issue #1713

2023-03-03

• + CP.7 Alias of B.1.1.529.5.2.6.7 found mainly in Japan, from pango-designation issue #1473

2023-03-01

• + EQ.1 Alias of B.1.1.529.5.1.33.1 found mainly in Germany, France, Japan and Denmark, from pango-designation issue #1522
• + CY.2 Alias of B.1.1.529.5.2.7.2 found in Japan, from pango-designation issue #1474

2023-02-27

• + EP.1 Alias of B.1.1.529.2.75.3.1.1.4.1, S:L452R, Bhutan, from #1676
• + EP.2 Alias of B.1.1.529.2.75.3.1.1.4.2, S:S1147L, N:G212S, Belgium/Europe
• + DY.1 Alias of B.1.1.529.5.2.48.1, China, S:A570S, from #1479
• + EN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1 France, S:V1264L, from #1696
• + EM.1 Alias of XBB.1.5.7.1, UK, S:R214L
• + EK.2 Alias of XBB.1.5.13.2, S:T259I, USA
• + XBB.1.5.15 G15957T, USA
• + XBB.1.5.16 T14766C, USA
• + XBB.1.5.17 C23635T, USA
• + XBB.1.5.18 ORF1a:T2300I, England/Europe
• + XBB.1.5.19 ORF1b:R172C, USA
• + XBB.1.5.20 C9532T, USA
• + XBB.1.5.21 ORF1a:K322R, C22945T, USA
• + XBB.2.6 Mostly Peru, C5144T, T5731A
• + XBB.8 T14574C after ORF1a:D82G, India/Malaysia/Brunei
• + XBC.1.5 Philippines/South Korea/Japan, ORF1a:T708I after A10042C, from #1671

2023-02-26

• + DV.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK, from pango-designation issue #1626
• + BF.7.14.7 Alias of B.1.1.529.5.2.1.7.14.7 found mainly in China, from pango-designation issue #1672

2023-02-24

• + DB.3 Alias of B.1.1.529.5.2.25.3 found mainly in Europe, from pango-designation issue #1613
• + BA.5.12 Alias of B.1.1.529.5.12 found mainly in Switzerland, France and Germany, from pango-designation issue #1640
• + *BA.5.2.64 Withdrawn: Reassigned BA.5.12 Switzerland lineage

2023-02-23

• + BA.5.2.64 Alias of B.1.1.529.5.2.64 found mainly in Switzerland, France and Germany, from pango-designation issue #1640

2023-02-22

• + EL.1 Alias of XBB.1.5.14.1, S:Q675H, Europe, from #1631

2023-02-21

• + XBB.1.5.14 C2695T, Europe/US
• + EL.1 Alias of XBB.1.5.14.1, S:Q675H, Europe
• + XBC.1.4 Australia, S:G184S, #1622

2023-02-20

• + DV.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.4, Malaysia/Singapore, S:I714V, from #1617
• + CH.1.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.5, ORF3a:P104S, found mainly in Denmark and UK, from pango-designation issue #1539
• + CH.1.1.10 Alias of B.1.1.529.2.75.3.4.1.1.1.1.10, Ireland, ORF1a:G442S
• + CH.1.1.11 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11, ORF1a:A1176T
• + CH.1.1.12 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12, S:L858I on ORF1a:A486V branch, Denmark
• + CH.1.1.13 Alias of B.1.1.529.2.75.3.4.1.1.1.1.13, ORF3a:S171L
• + CH.1.1.14 Alias of B.1.1.529.2.75.3.4.1.1.1.1.14, N:T362I
• + BN.1.2.2 Alias of B.1.1.529.2.75.5.1.2.2, C29546T
• + BN.1.2.3 Alias of B.1.1.529.2.75.5.1.2.3, C1471T
• + BN.1.2.4 Alias of B.1.1.529.2.75.5.1.2.4, ORF1b:D1746H
• + DS.3 Alias of B.1.1.529.2.75.5.1.3.1.3, Denmark, ORF3a:G254V
• + BN.1.3.5 Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from pango-designation issue #1516
• + BN.1.3.6 Alias of B.1.1.529.2.75.5.1.3.6 M:R174Q
• + BN.1.3.7 Alias of B.1.1.529.2.75.5.1.3.7 ORF1a:T1429I
• + BN.1.3.8 Alias of B.1.1.529.2.75.5.1.3.8 S:D1139H
• + EJ.1 Alias of B.1.1.529.2.75.5.1.3.8.1, S:I1225V
• + EJ.2 Alias of B.1.1.529.2.75.5.1.3.8.2, ORF1a:T4355I
• + BN.1.4.2 Alias of B.1.1.529.2.75.5.1.4.2, S:Q1113K
• + BN.1.4.3 Alias of B.1.1.529.2.75.5.1.4.3, ORF1a:P1096T
• + BN.1.4.4 Alias of B.1.1.529.2.75.5.1.4.4, ORF1b:V1149L, ORF1b:V1723M
• + BN.1.4.5 Alias of B.1.1.529.2.75.5.1.4.5, ORF1a:T3287I
• + BN.1.5.2 Alias of B.1.1.529.2.75.5.1.5.2, S:N481K
• + BF.7.14.4 Alias of B.1.1.529.5.2.1.7.14.4 China, ORF1a:T1844I
• + BF.7.14.5 Alias of B.1.1.529.5.2.1.7.14.5 China, C20703T
• + BF.7.14.6 Alias of B.1.1.529.5.2.1.7.14.6 China, C1973T
• + BF.7.27 Alias of B.1.1.529.5.2.1.7.27, C8752T, sibling of BF.7.14
• + DY.2 Alias of B.1.1.529.5.2.48.2, China, N:Q241K, from #1478
• + DY.3 Alias of B.1.1.529.5.2.48.3, China, ORF1a:T1788M, from #1472
• + DY.4 Alias of B.1.1.529.5.2.48.4, China, ORF1b:T2432I
• + EH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.28.1, Europe, S:S247N, S:Y248S, from #1648
• + XBB.1.5.11 ORF1a:G401S
• + XBB.1.5.12 S:T323I
• + XBB.1.5.13 T21880C, G28079T
• + EK.1 Alias of XBB.1.5.13.1, S:K417S, Austria from #1638
• + EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193
• + XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from https://github.com/jmcbroome/auto-pango-designation/pull/193
• + XBB.1.15 Defined by ORF1a:A540V on ORF8:G8* polytomy, found in USA, Guatemala, and Mexico. Automatically inferred by https://github.com/jmcbroome/autolin.
• + XBB.2.5 S:Q613H, from https://github.com/jmcbroome/auto-pango-designation/pull/193
• + XBF.4 Europe, ORF1a:H417Y, from https://github.com/jmcbroome/auto-pango-designation/pull/193
• + XBF.5 Australia, C2455T
• + XBF.6 Australia, ORF1a:V3986A
• + XBF.7 Global, N:T379I (not on ORF1a:K120N branch)
• + XBF.7.1 S:T323I
• + XBF.8 Australia, T9931C, C12970T
• + XBK.1 S:P1162S, from #1551 and https://github.com/jmcbroome/auto-pango-designation/pull/193
• + XBQ Recombinant lineage of BA.5.2 and CJ.1, defined by ORF1b:M454I, England and Canada, issue #1440 and autolin
• + XBR Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, Canada, USA, from issue #1637
• + XBS Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, from issue #1567
• + XBT Recombinant lineage of BA.5.2.34, BA.2.75, BA.5.2.34, Germany, from issue #1576

2023-02-15

• + BA.5.2.63 Alias of B.1.1.529.5.2.63 found mainly in Canada, from pango-designation issue #1636

2023-02-14

• + BF.7.26 Alias of B.1.1.529.5.2.1.7.26, G20679A
• + BF.26 Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, on C5284T branch, issue #1142
• + BF.32 Alias of B.1.1.529.5.2.1.32, found mainly in USA, on C5284T branch, from pango-designation issue #1250
• + BF.37 Alias of B.1.1.529.5.2.1.37, Japan, ORF1a:S944L, S:G446D, on C5284T branch
• + BF.40 Alias of B.1.1.529.5.2.1.40, S:V445A, on C5284T branch
• + EF.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, UK, ORF1b:V119I
• + XBB.2.1 Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons)
• + *BF.7.25 Withdrawn: Invisible to pangolin as positions C29708T is part of masked regions 1-255 and 29674-29903. Alias of B.1.1.529.5.2.1.7.25, C29708T

2023-02-13

• + BF.7.19.1 Alias of B.1.1.529.5.2.1.7.19.1, Japan, T7111C,C1915T,C16470T,A26219G on ORF8:T87I branch
• + BF.7.26 Alias of B.1.1.529.5.2.1.7.25, G20679A
• + EE.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.1, USA, N:T366I
• + EE.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.2, ORF1b:V1538I
• + EE.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.3, Canada/USA, C22498T
• + EE.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.4, Europe, S:Q52H
• + EE.5 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.5, USA, S:N185Y
• + EF.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1, C6040T
• + EF.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1, C23086T,T7783C
• + EF.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1, Brazil, S:F157L
• + EF.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.2, Spain, T15492C
• + EF.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.3, N:T166I
• + EF.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13, UK, ORF1b:V119I
• + ED.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.1, Japan, ORF3a:L108F, ORF1a:C433S
• + ED.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.2, USA, ORF1a:D928Y
• + ED.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.3, USA, S:D843N
• + BQ.1.1.52 Alias of B.1.1.529.5.3.1.1.1.1.1.1.52 USA/Mexico, C7006T

2023-02-12

• + CL.1.1 Alias of B.1.1.529.5.1.29.1.1, S:P1162L
• + CL.1.2 Alias of B.1.1.529.5.1.29.1.2, S:T883I
• + CL.1.3 Alias of B.1.1.529.5.1.29.1.3, S:S71F
• + BA.5.1.32 Alias of B.1.1.529.5.1.32, found mainly in Germany and China, from pango-designation issue #1488
• + BA.5.1.33 Alias of B.1.1.529.5.1.33, S:V1264L
• + BA.5.1.34 Alias of B.1.1.529.5.1.34, Denmark, S:P1162S
• + BA.5.1.35 Alias of B.1.1.529.5.1.35, ORF1a:I1525M
• + EB.1 Alias of B.1.1.529.5.1.35.1, USA, S:R346T
• + BA.5.1.36 Alias of B.1.1.529.5.1.