MEDAL-IITB / Fast_WSI_Color_Norm

Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology
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tutorial, clean code etc. #3

Open phiwei opened 5 years ago

phiwei commented 5 years ago

Hi,

thank you for the implementation, I will maybe test it in my project. While your paper shows interesting results regarding speed-up, you describe the code as "usable right out of the box". This is not true with the current documentation and code structure.

I would suggest:

Otherwise, the quality of the code invokes no confidence in the quality of its results. Best wishes

deepakanandece commented 5 years ago

I will put a tutorial regarding usage. It is in "main.py" you can find all the options. The variable name is intitutive. I agree more comments are required. Requirements are openslide, tensorflow, cv2 and other basic package. I will update the repo within a week. For sample images these are frely available on tcga website. However hosting digital pathology images is not allowed.