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MHH-RCUG
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nf_reporter
Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
MIT License
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make scripts easier
#26
LisaHollstein
closed
2 years ago
0
match kraken and wochenende name
#25
LisaHollstein
opened
2 years ago
0
Choose inputdata & kraken added
#24
JannoPeilert
closed
2 years ago
0
rm test_filenames_same
#23
LisaHollstein
opened
2 years ago
0
get scripts from Haybaler
#22
LisaHollstein
opened
2 years ago
0
comments
#21
LisaHollstein
opened
2 years ago
0
Wiki
#20
LisaHollstein
opened
2 years ago
0
more input
#19
LisaHollstein
opened
2 years ago
1
get rid of config.yaml
#18
LisaHollstein
opened
2 years ago
0
test data
#17
LisaHollstein
closed
2 years ago
0
add files via symbolic link
#16
LisaHollstein
closed
2 years ago
0
create no empty file if a haybaler_short.csv doesn't exist
#15
LisaHollstein
closed
2 years ago
0
process run_integration output in run_reporter_haybaler
#14
LisaHollstein
closed
2 years ago
8
use work directory in a way that haybaler can run
#13
LisaHollstein
closed
2 years ago
2
haybaler for raspir pos bacteria
#12
LisaHollstein
closed
2 years ago
2
raise warning if one input file is missing/can't be read
#11
LisaHollstein
closed
2 years ago
1
haybaler ingestion of nf_reporter output
#10
colindaven
opened
2 years ago
0
shorten to raspir_neg to increase visibility of raspir_positive
#9
colindaven
closed
2 years ago
1
if growth_rate missing no error occurs
#8
colindaven
closed
2 years ago
1
add growth data
#7
LisaHollstein
closed
2 years ago
0
Add growth_rate csv to nextflow
#6
colindaven
closed
2 years ago
0
add raspir column python script
#5
LisaHollstein
closed
2 years ago
0
initial dev work, now working and needs python comparison
#4
colindaven
closed
2 years ago
1
concept: metagen_painter
#3
colindaven
opened
2 years ago
2
integration
#2
colindaven
opened
2 years ago
0
Dev
#1
colindaven
closed
2 years ago
0