MJomaba flu-evidence-synthesis issues

MJomaba / flu-evidence-synthesis

Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques

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issues

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Version update to R4

#64 NaomiWaterlow closed 2 years ago
1
Failure when h_init>depth

#63 BlackEdder opened 6 years ago
0
Likelihood fix for high sample numbers

#62 BlackEdder closed 6 years ago
0
Make starting week configurable in inference (currently 35)

#61 BlackEdder opened 6 years ago
0
surely that's a glaring typo?

#60 c0d4w4rri0r closed 7 years ago
0
Calculating the number of new cases per year using the vaccination_scenario function

#59 jdawa closed 7 years ago
2
Update vignettes

#58 BlackEdder closed 7 years ago
0
Cleanup as_transmission_rate

#57 BlackEdder closed 7 years ago
0
Unify

#56 BlackEdder closed 7 years ago
0
R0

#55 BlackEdder closed 7 years ago
0
Add vignette explaining how to implement a different epidemiological model

#54 BlackEdder closed 7 years ago
0
Age-specific cases based on posterior distribution

#53 gracewutw opened 7 years ago
2
"contact_ids"

#52 gracewutw opened 7 years ago
1
Wanna fix some parameters

#51 gracewutw opened 8 years ago
1
Add verbose information to adaptive.mcmc for debugging purposes

#50 BlackEdder closed 8 years ago
0
Codes released on 2016-08-11

#49 gracewutw opened 8 years ago
14
Cost eff

#48 BlackEdder closed 8 years ago
0
[WIP] Efficacy for all risk groups

#47 BlackEdder closed 8 years ago
0
Implement algorithm 6b from Sherlock 2010 to improve mcmc mixing

#46 BlackEdder closed 8 years ago
0
Added some more tests to make sure new infectionODE returns same results as the old one

#45 BlackEdder closed 8 years ago
0
Change efficacy parameter to facilitate LR/HR vaccination strategies

#44 dthorrington closed 8 years ago
1
Dates for Epidemiological model

#43 BlackEdder closed 8 years ago
0
Petra's improvements

#42 BlackEdder closed 8 years ago
0
Test clean install

#41 BlackEdder closed 8 years ago
0
Change readme to recommend installation using devtools

#40 BlackEdder closed 8 years ago
0
Possible enhancements

#39 BlackEdder closed 8 years ago
0
Use init parameter values instead of a whole state (mcmcsample)

#38 BlackEdder closed 8 years ago
0
Add some sanity checking to the data

#37 BlackEdder opened 9 years ago
0
Write a vignette with the usage explained

#36 BlackEdder closed 8 years ago
2
Simulation could accept vector of starting densities (for each group/disease state).

#35 BlackEdder closed 8 years ago
1
Unify age groups

#34 BlackEdder closed 8 years ago
1
Better support for dates

#33 BlackEdder closed 8 years ago
0
Create a similar interface to our MCMC implementation as in R library(mcmc)

#32 BlackEdder closed 9 years ago
1
Move internal function to a separate namespace

#31 BlackEdder closed 9 years ago
0
Ili and confirmation data should have column with week numbers

#30 BlackEdder opened 9 years ago
0
Test for parameter values in long running test

#29 BlackEdder closed 8 years ago
0
vaccine_t::efficacy_year should be vector not array

#28 BlackEdder closed 8 years ago
0
one_year_SEIR_with_vaccination should take a minimum step time

#27 BlackEdder closed 9 years ago
2
Automatically email performance results

#26 BlackEdder opened 9 years ago
0
ODE slow down

#25 BlackEdder closed 8 years ago
3
Turn transmission regular in one_year_... into a matrix

#24 BlackEdder closed 9 years ago
0
Occurence grouped by week should be aware of dates

#23 BlackEdder closed 9 years ago
0
Use new vaccination object with dates from vaccination.calendar

#22 BlackEdder closed 9 years ago
0
Check whether covariance matrix is actually being used

#21 BlackEdder opened 9 years ago
0
Create and test multivariate normal generating code

#20 BlackEdder opened 9 years ago
0
Add proper libraries to suggestions

#19 BlackEdder closed 9 years ago
0
Cleanup and test covariance matrix calculation

#18 BlackEdder closed 9 years ago
0
MCMC often hangs when called from R

#17 BlackEdder closed 9 years ago
2
Ability to load old vaccination calendar files

#16 BlackEdder closed 9 years ago
1
Use tests as benchmarks

#15 BlackEdder closed 9 years ago
0