input annotation request was SARS-CoV-2 "M" gene with reactome pathway and biogrid with cross-annotation. in the "gene only" output, the whole graph is considered "biogrid-interaction-annotation" under "annotation" filtering, the pathway and GO filters have no effect (GO was not requested, separate issue will be posted).
when proteins are included in the input request, filtering out "gene-pathway-annotation" removes the SARS-CoV-2 M gene and it's interactions, which should all be biogrid interactions. if "M" is part of a pathway it should be the "pathway" defined as the set of all SARS2 genes.
filtering out "biogrid-interaction-annotation" removes expressed proteins and their "inferred_interactions" but leaves the actual biogrid "interacts_with" links visible.
also note that SARS2 "M" gene doesn't have translated protein node (this might be a data import error)
input annotation request was SARS-CoV-2 "M" gene with reactome pathway and biogrid with cross-annotation. in the "gene only" output, the whole graph is considered "biogrid-interaction-annotation" under "annotation" filtering, the pathway and GO filters have no effect (GO was not requested, separate issue will be posted).
when proteins are included in the input request, filtering out "gene-pathway-annotation" removes the SARS-CoV-2 M gene and it's interactions, which should all be biogrid interactions. if "M" is part of a pathway it should be the "pathway" defined as the set of all SARS2 genes.
filtering out "biogrid-interaction-annotation" removes expressed proteins and their "inferred_interactions" but leaves the actual biogrid "interacts_with" links visible.
also note that SARS2 "M" gene doesn't have translated protein node (this might be a data import error)