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MPIIComputationalEpigenetics
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DeepBlue
DeepBlue Epigenomic Data Server
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unit test local download
#119
felipealbrecht
opened
8 years ago
0
Create data type 'Methylation calls'
#118
felipealbrecht
opened
8 years ago
0
Hard limit the score matrix processing time.
#117
felipealbrecht
closed
7 years ago
1
Create user for Dive
#116
felipealbrecht
closed
8 years ago
0
info object from a select_genes request does not contain format information
#115
mlist
closed
8 years ago
12
select_genes method should accept genomic location range as input
#114
mlist
closed
8 years ago
0
Perform full text search -> full-text search
#113
felipealbrecht
closed
8 years ago
0
Merge description: Merge two region-set -> Merge two region sets
#112
felipealbrecht
closed
8 years ago
0
Check for negative values in the extend and flank functions
#111
felipealbrecht
closed
8 years ago
0
does select_regions check if the selected genome exists ?
#110
felipealbrecht
closed
8 years ago
0
Fix score matrix
#109
felipealbrecht
closed
8 years ago
0
Include in the get_regions::process in the status when the string building started
#108
felipealbrecht
closed
8 years ago
0
Connection::Connection() returns an invalid connection
#107
felipealbrecht
closed
8 years ago
0
New command: get_id(name, type, user_key)
#106
felipealbrecht
closed
8 years ago
1
Usability: expose DeepBlue _ids in XML-RPC queries
#105
ghost
closed
8 years ago
2
Rename "find_pattern" to "find_motif"
#104
felipealbrecht
closed
7 years ago
0
Script to create track hub files
#103
felipealbrecht
closed
8 years ago
1
Verify if a pattern annotation exists before the quey
#102
felipealbrecht
closed
7 years ago
1
Obtain all genomes of a query
#101
felipealbrecht
opened
8 years ago
0
Must throw error when use select_annotations with an non-existing annotations
#100
felipealbrecht
closed
8 years ago
0
Command query_experiment_type is not re-unsing existing queries.
#99
felipealbrecht
closed
8 years ago
0
clone command does not import the content_format, and total_size of the cloned experiments.
#98
felipealbrecht
closed
8 years ago
0
Info request return the parameters
#97
felipealbrecht
closed
8 years ago
0
server.info([], userkey) returns ['okay']
#96
edeas123
closed
8 years ago
1
cache queries results
#95
felipealbrecht
closed
8 years ago
0
server.info(request_id, userkey) should return details of the request type
#94
edeas123
closed
8 years ago
2
error in info() returns an array with one element.
#93
felipealbrecht
closed
8 years ago
0
DNase 1 counts
#92
Florian411
closed
8 years ago
1
info() on user queries
#91
felipealbrecht
closed
8 years ago
0
Check the output of fmt = "CHROMOSOME,START,END,@NAME,@LENGTH,@COUNT.NON-OVERLAP(TATA),\ @COUNT.NON-OVERLAP(CG),@COUNT.NON-OVERLAP((TATA|CG))"
#90
felipealbrecht
closed
8 years ago
0
Error in the count operations
#89
felipealbrecht
closed
8 years ago
3
Find genes by name must be case insensitive
#88
felipealbrecht
closed
8 years ago
0
the chromosomes list in the info(genome_id, user_key) is weird.
#87
felipealbrecht
closed
8 years ago
0
Chromosomes() does not accept genome id (only genome name)
#86
felipealbrecht
closed
8 years ago
0
Provide direct access to matched controls
#85
ghost
closed
8 years ago
1
Basic select_regions command
#84
ghost
closed
8 years ago
0
Speed up aggregate command
#83
ghost
closed
8 years ago
1
Function get_request_state does not exist
#82
ghost
closed
8 years ago
5
Implement bedtools-annotate like command
#81
felipealbrecht
closed
7 years ago
0
add_user_to_project does not detect admin
#80
felipealbrecht
closed
8 years ago
0
updates command
#79
felipealbrecht
closed
8 years ago
1
slop command
#78
felipealbrecht
closed
8 years ago
1
Remove chromosomes sequence when remove genome.
#77
felipealbrecht
opened
9 years ago
0
list_annotations do not normalize the genome name
#76
felipealbrecht
closed
9 years ago
0
Wrong API description in the cancel_request
#75
felipealbrecht
closed
9 years ago
0
Give users with INCLUDE_ANNOTATIONS to create new columns
#74
felipealbrecht
closed
9 years ago
0
Deny "modify_user" access to anonymous
#73
edeas123
closed
9 years ago
1
Improve GeneRegion memory consumption calculation
#72
felipealbrecht
closed
9 years ago
0
Include more gene columns for output
#71
felipealbrecht
closed
9 years ago
0
Implement @GENE_GTF_ATTRIBUTES metafield
#70
felipealbrecht
closed
9 years ago
0
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