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MPIIComputationalEpigenetics
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DeepBlue
DeepBlue Epigenomic Data Server
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Implement @GENE_ATTRIBUTE metafield for obtaining the gene regions attributes
#69
felipealbrecht
closed
9 years ago
0
Wrong regions are being accepted add_annotation
#68
felipealbrecht
closed
9 years ago
0
Parse GTF files.
#67
felipealbrecht
closed
9 years ago
0
Replace boost::shared_ptr to c++11 shared_ptr
#66
felipealbrecht
closed
9 years ago
0
URGENT: Listing all projects
#65
felipealbrecht
closed
9 years ago
0
Set maximum number of queue request by user
#64
felipealbrecht
opened
9 years ago
0
Import Gencode annotation
#63
felipealbrecht
closed
9 years ago
0
Implement @GENES("gene_set_name") metafield for regions output
#62
felipealbrecht
closed
7 years ago
1
Implement @GENE("gene_set_name") metafield for upload data
#61
felipealbrecht
closed
7 years ago
1
Command gene_location("gene_set_name", ["genes_identifiers", "genes_identifiers"]
#60
felipealbrecht
closed
9 years ago
0
Implement GeneRegion
#59
felipealbrecht
closed
9 years ago
0
Upload gene set
#58
felipealbrecht
closed
9 years ago
0
Develop Gene Set data type
#57
felipealbrecht
closed
9 years ago
1
Develop Genes data type
#56
felipealbrecht
closed
9 years ago
0
Create columns for supporting GTF and GFF3 formats
#55
felipealbrecht
closed
9 years ago
1
Include more details in the error message
#54
edeas123
closed
9 years ago
1
Experiment e20010 does not have an extra_metadata component
#53
edeas123
closed
9 years ago
1
server.info command does not give the error report
#52
edeas123
closed
9 years ago
0
change_extra_metadata store wrong data with samples
#51
felipealbrecht
closed
9 years ago
0
Create a file or include in the README all libraries that are used by the project
#50
felipealbrecht
opened
9 years ago
0
Execute server.info(me, user_key) command even with the lowest permission
#49
edeas123
closed
9 years ago
1
Web: search returns weird results
#48
ghost
closed
9 years ago
1
Include id (or _id) for the requests in server.info(request_id, user_key)
#47
edeas123
closed
9 years ago
0
Include user permission level as part of result of server.info("me", userkey)
#46
edeas123
closed
9 years ago
2
wrong error message when trying to set/unset a project as public
#45
felipealbrecht
closed
9 years ago
0
set_public_request(request_id, user_key)
#44
felipealbrecht
opened
9 years ago
0
list_saved_queries(user_key)
#43
felipealbrecht
opened
9 years ago
0
save_query("q_id", "comment", "public/private", user_key)
#42
felipealbrecht
opened
9 years ago
0
Include the aggregation functions names in the score_matrix command api description
#41
felipealbrecht
closed
9 years ago
0
rename parameters name in aggregate function:
#40
felipealbrecht
closed
9 years ago
0
wrong parameter description in score_matrix
#39
felipealbrecht
closed
9 years ago
0
Include parameter (in extra_metadata) to ignore unknow chromosomes in experiments
#38
felipealbrecht
closed
9 years ago
0
list_epigenetic_marks search for metadata
#37
felipealbrecht
closed
8 years ago
0
add_epigenetic_mark include metadata
#36
felipealbrecht
closed
8 years ago
0
modify_user_admin use user email or ID (not user key)
#35
felipealbrecht
closed
9 years ago
0
When including biosource, check the ontology_id field
#34
felipealbrecht
closed
9 years ago
0
filter list_biosources by extra metadata
#33
felipealbrecht
closed
9 years ago
1
info("query_id", user_key) gives weird genome information
#32
felipealbrecht
closed
9 years ago
0
info("query_id", user_key) gives wrong experiment names
#31
felipealbrecht
closed
9 years ago
0
Optimized filter
#30
felipealbrecht
closed
8 years ago
1
Optimized intersection
#29
felipealbrecht
closed
9 years ago
0
Directly download data - bypass xmlrpc
#28
felipealbrecht
closed
9 years ago
0
Set default request_max_memory
#27
felipealbrecht
closed
9 years ago
0
Set request_max_memory by user
#26
felipealbrecht
closed
9 years ago
0
User authentication / user administration command
#25
felipealbrecht
closed
9 years ago
0
Re-use same query for the same data
#24
felipealbrecht
closed
8 years ago
0
Re-use the same request_id for the same query id
#23
felipealbrecht
closed
9 years ago
2
Unit test for echo() command
#22
felipealbrecht
closed
9 years ago
0
Cache experiment ID at queries::build_experiment_query to the **DATASET** ID
#21
felipealbrecht
closed
9 years ago
0
Optimize score_matrix
#20
felipealbrecht
closed
8 years ago
0
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