MachineLearningLifeScience poli issues

MachineLearningLifeScience / poli

Protein Objectives Library

MIT License

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issues

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Add the work of Neidhart et al. as a black-box

#207 miguelgondu opened 53 minutes ago
0
Should we add CALVADOS?

#206 miguelgondu opened 56 minutes ago
2
Add Ehrlich functions

#205 miguelgondu opened 1 hour ago
0
Updates the test for dockstring: 11.9 -> 11.8

#204 miguelgondu closed 1 week ago
0
Fix cryptic error on `smb`, plus `numpy==2.0` compatibility

#203 miguelgondu closed 2 weeks ago
0
`smb` black box returns a cryptic error on Java failure

#202 miguelgondu closed 2 weeks ago
0
Update black boxes to `numpy==2.0`

#201 miguelgondu opened 2 weeks ago
0
Updates to ask all envs to install numpy less than 2.0

#200 miguelgondu closed 2 weeks ago
0
Changing the black box info from static to dynamic

#199 miguelgondu opened 3 weeks ago
0
Merging the second release to master

#198 miguelgondu closed 4 weeks ago
0
Revisiting multiobserver w. the new interface

#197 miguelgondu opened 1 month ago
0
Allows other values than NaN for unplayable levels in SMB

#196 miguelgondu closed 1 month ago
0
Isolated functions are not terminating gracefully

#195 miguelgondu opened 1 month ago
0
Implements a multi-observer

#194 miguelgondu closed 1 month ago
0
Create a composite observer (i.e. using more than one observer for logging)

#193 miguelgondu closed 1 month ago
0
Adds a warning when the user is not setting an observer properly

#192 miguelgondu closed 1 month ago
0
add negate flag to invert negative GP predictions for max objectives

#191 RMichae1 closed 1 month ago
0
Add negate switch to CBas task to allow for maximizing objectives

#190 RMichae1 closed 1 month ago
0
fix RFPFoldXStabilityAndSASA create, eliminate inner_function

#189 RMichae1 closed 1 month ago
0
rfp problem instantiation post-bugfix has no inner function Line 211 HOTFIX

#188 RMichae1 closed 1 month ago
0
add MolOpt VAE Wrapper

#187 RMichae1 opened 1 month ago
1
Test `foldx` by mocking the binary/black box call

#186 miguelgondu opened 1 month ago
0
Abstracts away isolated function imports

#185 miguelgondu closed 1 month ago
1
`FoldX` breaks in parallel

#184 miguelgondu closed 1 month ago
1
Bugfix: LogP and QED are discrete objectives - adds a shortcut to repository

#183 miguelgondu closed 2 months ago
0
Adds Levy and Rosenbrock test functions

#182 miguelgondu closed 2 months ago
0
Adds benchmarks

#181 miguelgondu closed 2 months ago
0
Adding the remaining PMO tasks

#180 miguelgondu closed 2 months ago
1
What happens if you don't specify an `observer_name`?

#179 miguelgondu opened 3 months ago
0
Adds the Branin toy function, and allows the user to specify embedded dims

#178 miguelgondu closed 3 months ago
0
Adds the Hartmann6D objective to toy problems

#177 miguelgondu closed 3 months ago
0
Calling methods in `ExternalFunction`s

#176 miguelgondu opened 3 months ago
0
Discrete `smb` black box

#175 miguelgondu closed 3 months ago
0
Registering multiple observers

#174 SimonBartels closed 1 week ago
5
Implement `get_problem_collections`

#173 miguelgondu closed 2 months ago
1
A unified interface for isolation inside `AbstractBlackBox`

#172 miguelgondu closed 1 month ago
0
Should we send the observer an `x0` and `y0`?

#171 miguelgondu opened 3 months ago
0
In isolation, the user should be encouraged to create instances of objects

#170 miguelgondu opened 3 months ago
0
Merges the first version of `poli` to master

#169 miguelgondu closed 3 months ago
0
v0.0.1 of `poli`

#168 miguelgondu closed 3 months ago
0
Black boxes should keep track of seeds

#167 miguelgondu opened 3 months ago
0
Include the relevant black boxes from of guacamol

#166 miguelgondu closed 2 months ago
0
Adds an exception for when foldx is not found

#165 miguelgondu closed 3 months ago
0
Moves negative and multiobjective black boxes to new interface

#164 miguelgondu closed 3 months ago
0
Allows for creating black boxes without instancing problem factories

#163 miguelgondu closed 3 months ago
0
Adds a test of multiple observer registration

#162 miguelgondu closed 4 months ago
0
Implements a new interface for `create`

#161 miguelgondu closed 4 months ago
0
Custom function API addition

#160 RMichae1 opened 5 months ago
4
158 gfpcbas elbo objective misspecified

#159 RMichae1 closed 5 months ago
0
GFPCBas ELBO objective misspecified

#158 RMichae1 closed 5 months ago
0