MarWoes wg-blimp issues

MarWoes / wg-blimp

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data

GNU Affero General Public License v3.0

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issues

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Error in rule gemBS

#26 deb0612 opened 3 months ago
3
Error in rule prep_gemBS_files:

#25 lexie-lee opened 1 year ago
1
How to find tool default parameters

#24 ghost closed 2 years ago
0
SA Builder Error running the example

#23 ghost closed 2 years ago
1
wg-blimp v0.10.0

#22 JakeLehle closed 2 years ago
8
Environment installation broken.

#21 JakeLehle closed 2 years ago
2
Update benchmarkPlot.R

#20 JakeLehle closed 2 years ago
0
Update benchmarkPlot.R

#19 JakeLehle closed 2 years ago
0
Pipeline fails due to Picard installation

#18 MarWoes closed 2 years ago
8
Issue with bwameth.py errno 32

#17 JakeLehle closed 2 years ago
8
How to provide --latency-wait flag? Is this the problem?

#16 ebprideaux closed 2 years ago
1
Are there pipeline options for single-ended reads?

#15 ntinamu001 opened 3 years ago
1
Running wg-blimp in one control and one experiment data, without replication.

#14 ntinamu001 closed 2 years ago
3
run pipeline for one sample

#13 icanwinwyz closed 2 years ago
2
Switch to snakemake environments

#12 MarWoes closed 3 years ago
1
Running wg-blimp in cluster environments

#11 emattei closed 2 years ago
4
Add error message when sample .csv contains no (or wrong) column names

#10 MarWoes opened 4 years ago
0
Make create-config fastq selection less ambigous

#9 MarWoes opened 4 years ago
0
Picard running out of disk space

#8 MarWoes closed 4 years ago
4
Faulty hg19 gene location annotations

#7 MarWoes closed 4 years ago
1
Broken Snakefile (invalid name for input, output, ...): insert is reserved for internal use

#6 MarWoes closed 4 years ago
2
Support for different species

#5 lardenoije opened 4 years ago
12
Reference genome

#4 freedomq8 closed 4 years ago
2
FASTQ name conflict for sample names that are a substring of other sample names

#3 MarWoes closed 4 years ago
2
IGV BAM file links not working in Shiny interface

#2 MarWoes closed 4 years ago
2
Qualimap report inconsistent to mosdepth

#1 MarWoes opened 5 years ago
0