MareesAT GWA_tutorial issues

MareesAT / GWA_tutorial

A comprehensive tutorial about GWAS and PRS

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Failed to select autosomal SNPs only (QC Step 3)

#25 Franklin593 opened 8 months ago
0
Some questions about qqplots

#24 Isa0529 opened 1 year ago
0
why individual 13291 NA07045 in 0.2_low_call_rate_pihat.txt

#23 usernicai opened 1 year ago
1
THIS IS A TEST

#22 BinooProg closed 1 year ago
1
how to add the kinship matirx

#21 zhoudreames closed 1 year ago
1
I have failed convert vcf to Plink(v1.07) format

#20 Wusun5 opened 2 years ago
0
Failed to open snp_1_22.txt

#19 TareqAldirawi opened 2 years ago
0
Error: 'legend' is of length 0

#18 Adonyo-Emmanuel opened 2 years ago
3
ftp vs https in downloading 1000 genome vcf file in Step 2_Population_stratification

#17 SarojaSomu opened 2 years ago
1
Permutation step, Error? or My fault?

#16 zzjl20 opened 2 years ago
0
problem solved: download site of qqman

#15 Clemence50421 closed 2 years ago
0
How to Create HapMap_3_r3 ( bim, bed and fam )

#14 Kiran936 opened 2 years ago
1
data for 0.2_low_call_rate_pihat.txt

#13 Manonanthini opened 2 years ago
2
Any plan to have an update to GWA_tutorial?

#12 Shicheng-Guo opened 2 years ago
1
Quantitative phenotypes QC

#11 elssam opened 3 years ago
0
Miss MDS_merge2.mds file

#10 Mohammad-Vahed opened 3 years ago
1
Could you please tell me how to "inversion.txt" in the 1_QC_GWAS folder

#9 8865225 opened 3 years ago
2
How to confirm which sub has the lower call rate of each pair that I should remove

#8 tongwang-en opened 3 years ago
0
The system cannot find the path specified.

#7 green-ear-rabbit opened 4 years ago
0
Setting Reference Genome

#6 KarthickRajaNarayanan closed 4 years ago
0
.vcf has fewer tokens than expected error

#5 sererenaa opened 4 years ago
8
Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder

#4 ulysses1881826 opened 4 years ago
8
p-value threshold for HWE deviation

#3 blueskypie opened 5 years ago
1
controlling population stratification

#2 blueskypie opened 5 years ago
1
convert vcf to plink step missing id setting

#1 trptyrphe11 opened 6 years ago
4