server

The server software is for setting up web services outside those of Github (e.g. serving website, docs and R package) using Docker (see the docker-compose.yml; with reverse proxying from subdomains to ports by Caddy):

Quick Start

# setup folders
mkdir -p /share/github

# clone the repository
cd /share/github
git clone https://github.com/MarineSensitivity/server

# set environment variables: echo echo
cd /share/github/server
echo 'PASSWORD=*******' > .env

# docker launch as daemon
docker compose up -d

Services

• rstudio\ integrated development environment (IDE) to code and debug directly on the server \ More info..

• shiny\ interactive applications\ e.g., shiny.marinesensitivity.org/map\ \ More info..

• pgadmin\ PostGreSQL database administration interface\ \ More info..

• api\ custom API: using R plumber\ \ More info..

• swagger\ generic database API: using PostGREST\ \ More info..

• tile\ _spatial database API: using pgtileserv for serving vector tiles\ \ More info..

Connect

# ssh
pem='/Users/bbest/My Drive/private/msens_key_pair.pem'
ssh -i $pem ubuntu@msens1.marinesensitivity.org

# ssh with tunneling to postgis database
pem='/Users/bbest/My Drive/private/msens_key_pair.pem'
ssh -i $pem -L 5432:localhost:5432 ubuntu@msens1.marinesensitivity.org

# $PASSWORD
cat '/Users/bbest/My Drive/private/msens_server_env-password.txt'

Restart

cd ~/server
git pull

# restart with any new configs
sudo docker restart

# update software
sudo docker compose up -d

Reference

• Server Setup on AWS as EC2 instance at allocated IP address 100.25.173.0

2024-06-17

• CRAN as Ubuntu Binaries - r2u

sudo apt upgrade