projectx-2021

Bioconductor

• Use r/bioconductor to fetch RNA-seq data per Ramirez et al.
• It runs in a docker container as configured in docker-compose.yml
• Install docker, docker-compose, and run docker-compose up to start the r/bioconductor container
  • Make sure the docker daemon is running
  • Recommend to install Docker Desktop
  • When the Docker Desktop is running, the daemon should be up
• Go to localhost:8787 to login to RStudio
  • Username is rstudio
  • Password is bioc
• The ~/projectx-2021 directory of the container maps to ./r of this project