CellML Model Verification

This project focuses on verifying CellML models that cannot be directly converted to Bond Graphs.

Overview

The code is designed to read CellML files with specially annotated variables, encrypted to contain specific information for decoding in Python.

Project Structure

• Organization: Methods and functions are structured across various Python files, each dedicated to specific tasks.
• Main Branch: The most current and reliable version of the code is always available in the main branch.

Getting Started

1. Dependencies: Install required packages listed in requirements.txt.
2. CellML file: Change the path in "cellml_file_dir" and "cellml_file" in main.py to your desired CellML file path.
3. Run the Code: Execute main.py to initiate the verification process.

How It Works

The verification task is orchestrated by the main.py file, which calls essential functions for the process.

Note

Currently, annotations in CellML files are assumed to be variable IDs encrypted with specific information. Feel free to check the documentation for more details.