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MicrobeLab
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DeepMicrobes
DeepMicrobes: taxonomic classification for metagenomics with deep learning
https://doi.org/10.1093/nargab/lqaa009
Apache License 2.0
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Training on multiple genomes
#35
Gayathri142
opened
1 week ago
5
Something about "subset*.tfrec"
#34
yongrenr
opened
1 month ago
7
About train_epoch
#33
XLOXL
opened
1 month ago
2
How should I run this model in single-end mode?
#32
stargazer-dot
opened
5 months ago
5
AttributeError: module 'tensorflow' has no attribute 'logging'. Did you mean: '_logging'? - issue while creating tfrec
#31
Gayathri142
opened
6 months ago
1
Model weights for training
#30
Gayathri142
opened
8 months ago
2
Question about the size of the model
#29
viccc17
opened
8 months ago
3
Error occurred during model training.
#28
XLOXL
opened
1 year ago
8
Error training a custom model
#27
GiovanniFaldani
opened
1 year ago
3
Question about training a DeepMicrobes model to predict the taxonomy from phylum to species
#26
Steven-GUHK
opened
1 year ago
13
Request for Pretrained Model
#25
LoadStar822
opened
1 year ago
0
Trained weights not accesible
#24
CompBioML
opened
1 year ago
2
关于DeepMicrobe论文中的细节问题想向您请教
#23
htaohan
opened
1 year ago
2
Running DeepMicrobes with TensorFlow 2.x
#22
Mashin6
opened
1 year ago
4
UnicodeEncodeError: 'ascii' codec can't encode character '\ufeff' in position #
#21
Ahmed-Shibl
opened
1 year ago
5
Versioned release package for DeepMicrobes
#20
jayramr
opened
1 year ago
11
Error in tfrec_train_kmer.sh with SILVA 138.1 SSU database as training set
#19
oschakoory
opened
2 years ago
5
model weights not saving?
#18
helloftroy
closed
2 years ago
2
Error in tfrec_train_kmer.sh with a customized training set
#17
shawnnn3di
opened
2 years ago
3
failed prediction only in some samples
#16
ramtinz
opened
2 years ago
2
running DeepMicrobes in RHEL 8.4
#15
ramtinz
opened
2 years ago
5
problem running the example tfrec conversion on Windows Subsystem for Linux WSL and likewise on docker
#14
ramtinz
opened
2 years ago
7
Future work?
#13
dbrami
opened
2 years ago
0
Error: seq-shuf not detected
#12
mrumi
opened
3 years ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#11
animesh
closed
3 years ago
0
0 byte .tfrec
#10
animesh
closed
3 years ago
3
where is tfrec_predict_kmer.sh?
#9
animesh
closed
3 years ago
1
ERROR :parallel not detected.
#8
chulghim
opened
3 years ago
3
tfrec_train_kmer.sh tries to create directories in such a way that script fails.
#7
lambertsbennett
closed
2 years ago
1
Different prediction results for the same fastq files
#6
ramtinz
opened
3 years ago
2
reloading model resets accuracy
#5
cvdelannoy
opened
4 years ago
1
Retraining seq2species model gives error
#4
Bartvelp
closed
4 years ago
8
Prediction using the seq2species model
#3
Bartvelp
closed
4 years ago
2
Optimal hyperparameters
#2
ag14774
closed
4 years ago
1
tensorflow.python.framework.errors_impl.InvalidArgumentError
#1
yi1873
closed
4 years ago
4