issues
search
MicrobialDarkMatter
/
nanomotif
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
MIT License
22
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Installation issue: MTase-linker
#75
JSBoejer
opened
6 days ago
0
Clean up motif positions
#74
SebastianDall
closed
2 weeks ago
0
Bug fix include binned contigs to bins with no methylation pattern
#73
SebastianDall
closed
2 weeks ago
0
Read level methylation
#72
SorenHeidelbach
closed
2 weeks ago
0
BUGFIX: adjusting snakemake version
#71
JSBoejer
closed
1 month ago
0
Benchmark with `modkit find-motifs`
#70
Ge0rges
opened
1 month ago
1
uBAMs request
#69
arzoopatel5
opened
1 month ago
0
fix issue with contig_bin.tsv reading #67
#68
brambloemen
closed
1 month ago
0
polars.exceptions.ComputeError
#67
brambloemen
closed
1 month ago
0
Updating code comments in MTase-linker src
#66
JSBoejer
closed
2 months ago
0
MTase linker adding spaces to output results for most jobs in workflow.
#65
osvatic
opened
2 months ago
5
--save_scores output legend
#64
brambloemen
closed
1 month ago
2
Save methylated positions
#63
SebastianDall
closed
2 months ago
0
57 fix contig naming
#62
SebastianDall
closed
2 months ago
0
57 fix contig naming
#61
SebastianDall
closed
2 months ago
0
Identified motifs missing in nanomotif assignment table
#60
KerrinSteensen
closed
2 months ago
4
motif_discovery step fails at end
#59
osvatic
closed
2 months ago
1
57 generalize contig name passing
#58
SebastianDall
closed
2 months ago
0
Generalize contig name passing
#57
SebastianDall
closed
2 months ago
0
AssertionError: DNA sequence must be a nucleotide sequence of ATGCRYSWKMBDHVN
#56
brambloemen
closed
2 months ago
2
Arguments update
#55
SorenHeidelbach
closed
2 months ago
0
Error message of motif_discovery
#54
YuyaKiguchi
closed
2 months ago
4
Fails with specific polars version
#53
SorenHeidelbach
closed
2 months ago
0
Save methylated positions
#52
SebastianDall
closed
2 months ago
0
BUGFIX: MTase-Linker argparser
#51
JSBoejer
closed
4 months ago
0
Update _version.py
#50
SorenHeidelbach
closed
4 months ago
0
Updating setup.py to include .smk files in installation
#49
JSBoejer
closed
4 months ago
0
Update _version.py
#48
SorenHeidelbach
closed
4 months ago
0
Arguments update and addition
#47
SorenHeidelbach
closed
4 months ago
0
chore: Update package_data in setup.py
#46
SorenHeidelbach
closed
4 months ago
0
Output documentation MTase-linker
#45
JSBoejer
closed
4 months ago
0
Post process fixes
#44
SorenHeidelbach
closed
4 months ago
0
Noise motif filtration index
#43
SorenHeidelbach
closed
4 months ago
1
Sub-motif removal removes identical motifs
#42
SorenHeidelbach
closed
4 months ago
1
MTase-linker and bin improvement usage documentation
#41
SorenHeidelbach
closed
4 months ago
0
Save methylated positions
#40
SorenHeidelbach
closed
4 months ago
0
Added motif merge at bin_consensus level
#39
SorenHeidelbach
closed
4 months ago
0
MTase-linker and bin improvement usage documentation
#38
JSBoejer
closed
4 months ago
0
MTase linker 4mC update
#37
SorenHeidelbach
closed
4 months ago
0
Stability update
#36
SorenHeidelbach
closed
4 months ago
0
Question: Read vs contig level analysis
#35
nschuiling
opened
5 months ago
1
installation MTase-linker
#34
MBiggel
closed
1 month ago
1
find-motifs
#33
jpinus
closed
4 months ago
3
monoculture testrun not working?
#32
mult1fractal
closed
5 months ago
9
bug: wrong command check
#31
SorenHeidelbach
closed
5 months ago
0
Further documentaion
#30
SorenHeidelbach
closed
4 months ago
0
PyPi upload workflow
#29
SorenHeidelbach
closed
4 months ago
0
Read the docs
#28
SorenHeidelbach
closed
5 months ago
0
Parser update
#27
SorenHeidelbach
closed
5 months ago
0
M4c incorporation
#26
SorenHeidelbach
closed
5 months ago
0
Next