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MikeAxtell / bam2wig

Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options
GNU General Public License v3.0
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samtools depth max is 8000 #2

Closed MikeAxtell closed 9 years ago

MikeAxtell commented 10 years ago

Just realized that samtools depth will never report a depth higher than 8000. So wiggle files are inaccurate at locations with >8000 read-depth. A major problem!

https://biostar.usegalaxy.org/p/6650/

MikeAxtell commented 9 years ago

Fixed. samtools depth is no longer used as of version 1.0