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Mizzou-CBMI
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COSMOS2
Python Scientific Pipeline Management System
GNU General Public License v3.0
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Add possibility to keep command script on s3 temp
#154
valeandri
closed
1 year ago
1
Add custom docker mount points
#153
valeandri
closed
2 years ago
3
Mount custom volumes to Docker image
#152
valeandri
closed
2 years ago
1
pythong instead of python in the README
#151
njbernstein
closed
2 years ago
1
Community suggestion
#150
loganylchen
closed
3 years ago
1
SQLAlchemy 1.4 breaks Cosmos
#149
daveeloo
closed
2 years ago
0
WIP: switch to poetry
#148
danielgafni
closed
2 months ago
0
Add shm_size option to drm_options of awsbatch
#147
danielgafni
closed
3 years ago
1
WIP performance check
#146
egafni
closed
3 years ago
0
issue #143 env variables + black
#145
danielgafni
closed
3 years ago
2
env variables + black
#144
danielgafni
closed
3 years ago
0
Specify Environment Variables for aws batch
#143
egafni
closed
3 years ago
5
SLURM example
#142
loganylchen
closed
3 years ago
1
fixed wrong code
#141
danielgafni
closed
4 years ago
0
submitting jobs can be stopped with ctrl-c
#140
danielgafni
closed
4 years ago
0
Tasks: fixed max page value for cases like total 10 tasks with 4 tasks per page
#139
danielgafni
closed
4 years ago
0
missing_ok option for getting jobs info in drm_awsbatch
#138
danielgafni
closed
4 years ago
0
hang fix
#137
danielgafni
closed
4 years ago
0
Handle a crash when AWS roles have wrong permissions
#136
danielgafni
closed
4 years ago
0
moved per page button to the top
#135
danielgafni
closed
4 years ago
0
Status and page loading fix
#134
danielgafni
closed
4 years ago
0
page fix
#133
danielgafni
closed
4 years ago
0
Pagination, search, sorting for the Stage page.
#132
danielgafni
closed
4 years ago
0
Spot retry
#131
egafni
closed
4 years ago
0
Parallel awsbatch
#130
egafni
closed
4 years ago
0
Signals and more black
#129
egafni
closed
4 years ago
0
drop python2 support
#128
egafni
closed
4 years ago
0
Fix incorrect license metadata.
#127
shields-fn
closed
4 years ago
1
Nboley/debug drm issues
#126
nboley
closed
4 years ago
0
Defend against long timeouts after qsub returns a valid job id.
#125
mdpearson
closed
4 years ago
0
Remove pytest.
#124
nboley
closed
4 years ago
0
AWSBatch
#123
egafni
closed
4 years ago
1
Fixing docs for add_task()
#122
odoublewen
closed
4 years ago
1
Ecs
#121
egafni
closed
4 years ago
0
fixing typos in docs
#120
odoublewen
closed
4 years ago
0
Increase reliability when grid engine CLI tools hang or return invalid data
#119
mdpearson
closed
4 years ago
3
latest COSMOS release breaks python 2 compatibility
#118
ahvigil
closed
4 years ago
1
Implement drm ge qdel
#117
annamerk
closed
5 years ago
0
Recover if a job transiently disappears from qstat.
#116
mdpearson
closed
5 years ago
0
Remove log_errors parameter from drm_statuses().
#115
mdpearson
closed
5 years ago
0
Avoid any shell-quoting issues in trap command.
#114
mdpearson
closed
5 years ago
0
Kubernetes support in COSMOS2
#113
SSunkara
closed
4 years ago
1
official website not found
#112
JakLiao
closed
5 years ago
0
Bug/pip 942/fix k8s memory request
#111
annadcunningham
closed
5 years ago
0
Correct memory request to k8s-jobs
#110
gsanders
closed
5 years ago
1
make web application an optional Cosmos extra
#109
ahvigil
closed
4 years ago
6
runweb should be an optional extra
#108
ahvigil
closed
3 years ago
1
Add retries to kstatus and other bugfixes
#107
annadcunningham
closed
5 years ago
4
Avoid dereferencing None
#106
mdpearson
closed
6 years ago
3
Create log directories if they do not exist yet
#105
ianlo
closed
6 years ago
1
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