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Mizzou-CBMI
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COSMOS2
Python Scientific Pipeline Management System
GNU General Public License v3.0
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bump version to 2.8.8
#104
arifalkner
closed
6 years ago
0
Support max_attempts in k8s-jobs DRM
#103
arifalkner
closed
6 years ago
0
Do not raise error if pod is in invalid state
#102
arifalkner
closed
6 years ago
0
Fix k8s-jobs log capturing error
#101
arifalkner
closed
6 years ago
0
Add "partition" to optional_drm_options
#100
arifalkner
closed
6 years ago
0
Fix none bug
#99
arifalkner
closed
6 years ago
0
Allow k8s-jobs DRM tasks to specify retry limits
#98
arifalkner
closed
6 years ago
0
remove TEXT default value for mysql error
#97
loganylchen
closed
6 years ago
1
Include tasks with an always_cleanup DRM in non-cleanup terminate
#96
ghost
closed
6 years ago
1
mysql error
#95
loganylchen
closed
6 years ago
3
Support task queues
#94
ghost
closed
6 years ago
1
Improving readability and maintainability
#93
razorstorm
closed
6 years ago
0
Fix required_drm_options default None bug
#92
ghost
closed
6 years ago
0
Add comments surrounding cleanup and fix terminate logic
#91
ghost
closed
6 years ago
0
relax type checks
#90
benjschiller
closed
6 years ago
5
Add K8S-Jobs DRM Support
#89
ghost
closed
6 years ago
1
How to change the `log` dir
#88
loganylchen
closed
6 years ago
4
Support running tasks in containers
#87
ghost
closed
6 years ago
0
Add docker support
#86
arifalkner
closed
6 years ago
0
How to change `_default_task_log_output_dir`
#85
loganylchen
closed
6 years ago
1
Support qsub -jc, make qstat/qacct importable, fix summary units
#84
mdpearson
closed
6 years ago
5
Cosmos examples fail on a fresh install (conda, both python3 and python2.7)
#83
lucventurini
closed
6 years ago
9
cosmos: error: too few arguments error even after setting
#82
man4ish
closed
6 years ago
1
require networkx>=2.0. fixes #80
#81
1pakch
closed
6 years ago
1
Examples and tests fail on fresh install
#80
1pakch
closed
6 years ago
0
All else being equal, schedule tasks in the order added to the DAG.
#79
mdpearson
closed
6 years ago
1
Fix `stage_delete` to not throw an exception
#78
mdpearson
closed
6 years ago
2
Defend against SGE's weird response to network failure
#77
mdpearson
closed
7 years ago
3
use same scheme for setting default Task parameters for default_max_a…
#76
egafni
closed
7 years ago
0
Set max_attempts on a per-Task basis, detect timeouts from Tasks that use /usr/bin/timeout
#75
mdpearson
closed
7 years ago
0
p3k do not merge
#74
egafni
closed
7 years ago
0
Don't use the tempfile module in drm_ge
#73
mdpearson
closed
7 years ago
1
Clarification on slurm tasks in the workflow
#72
RML-Admin
closed
7 years ago
5
Speed up reaping of GridEngine Jobs
#71
egafni
closed
3 years ago
0
Exit much more quickly after ^C; document signal-handling code.
#70
mdpearson
closed
7 years ago
0
Adding SLURM drm.
#69
karel-kk
closed
7 years ago
0
Time-stamp suspensions/resumptions and log cumulative subordination time.
#68
mdpearson
closed
7 years ago
0
Use -w flag correctly this time.
#67
mdpearson
closed
7 years ago
0
Don't submit jobs that can't run. Set t.finished == True for killed jobs.
#66
mdpearson
closed
7 years ago
0
more ops help
#65
mdpearson
closed
7 years ago
3
Make Cosmos play nicely with Ops
#64
mdpearson
closed
7 years ago
1
defend against Error 26 condition that kills jobs before they are scheduled [do not merge]
#63
mdpearson
closed
7 years ago
1
Restore SGE poll interval to 5 sec (from 0.3 sec).
#62
mdpearson
closed
7 years ago
0
Minor web improvements
#61
egafni
closed
7 years ago
0
Improve logging; defend against signals, scheduler interruptions, and SGE timeouts
#60
mdpearson
closed
7 years ago
5
All Licenses Mentioned
#59
doctormo
closed
7 years ago
2
Don't crash when qmod -sj suspends a workflow with tasks running locally.
#58
mdpearson
closed
7 years ago
2
Extract task results within workflow
#57
kmhernan
closed
7 years ago
1
Add a --fail-fast option to Cosmos
#56
mdpearson
closed
7 years ago
0
Log qdel events and tear down tasks cleanly when a workflow is killed by SGE
#55
mdpearson
closed
7 years ago
1
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