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Mizzou-CBMI
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COSMOS2
Python Scientific Pipeline Management System
GNU General Public License v3.0
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PBS uses string job ids
#54
egafni
closed
8 years ago
0
Don't crash if qacct recycles job ids.
#53
mdpearson
closed
8 years ago
0
Response to feedback on PR #51
#52
mdpearson
closed
8 years ago
0
Recover from unreliable qstat and qacct output
#51
mdpearson
closed
8 years ago
0
execution of python code after the end of a cosmos task
#50
aurelBZH
closed
8 years ago
1
tools and variable
#49
aurelBZH
closed
8 years ago
1
Log raw qacct data and exit status when a task fails.
#48
mdpearson
closed
8 years ago
0
Don't crash or return garbage data when qacct reports multiple records.
#47
mdpearson
closed
8 years ago
0
Update visualization of DAGs
#46
egafni
closed
3 years ago
0
CWL support for COSMOS2
#45
pvanheus
closed
4 years ago
4
Make directory creation more user-friendly.
#44
mdpearson
closed
8 years ago
0
Reduce cluster polling frequency and fix a crash in the ge drm.
#43
mdpearson
closed
8 years ago
0
Changes to logging and CLI arguments
#42
mdpearson
closed
8 years ago
0
Simplify flow by nesting a yield statement within an except clause.
#41
mdpearson
closed
8 years ago
0
Hackathon patches, round 2
#40
mdpearson
closed
8 years ago
0
Hackathon+jp
#39
jpaulLD
closed
8 years ago
0
Changes to hackathon branch to help with ruffus->cosmos migration.
#38
mdpearson
closed
8 years ago
0
question about the setup of cosmos on computer cluster
#37
aurelBZH
closed
6 years ago
1
question about project with multiple workflow
#36
aurelBZH
closed
7 years ago
1
Stage cycles throw a non-descriptive error
#35
egafni
closed
7 years ago
1
problem of compatibility between pygraphviz and cosmos
#34
aurelBZH
closed
8 years ago
5
compatibility problem between pop_execution_arg and cosmos.start()
#33
aurelBZH
closed
8 years ago
2
empty dag hangs forever
#32
egafni
closed
3 years ago
1
problem with the second example?
#31
aurelBZH
closed
8 years ago
1
Documentation offline ?
#30
kevintc
closed
8 years ago
3
File download from a wide range of sources
#29
yassineS
closed
8 years ago
3
reset stage finished_on
#28
egafni
closed
3 years ago
0
Error: Internal Server Error on Indel Realigner intermittently
#27
Double-O-ren
closed
8 years ago
7
Add Stage Status "Finished, but incomplete"
#26
egafni
closed
3 years ago
0
dna-seq is not a valid choice on genomekey v 0.1.0
#25
Double-O-ren
closed
9 years ago
1
Process stops in the middle, no suitable queues
#24
Double-O-ren
closed
9 years ago
5
Travis
#23
yassineS
closed
8 years ago
3
Travis CI
#22
yassineS
closed
8 years ago
2
Feature/parallel
#21
egafni
closed
9 years ago
0
How to limit the number of running tasks when drm=='local'?
#20
sa9
closed
9 years ago
10
Feature/no tool
#19
egafni
closed
9 years ago
0
No taskfiles
#18
egafni
closed
9 years ago
0
persist=False has no effect
#17
sa9
closed
9 years ago
12
Examples
#16
sa9
closed
9 years ago
1
Generated "command_attempt1.bash" Script does not enter into output directory
#15
MarcusWalz
closed
9 years ago
4
Issue launching main.py
#14
manonSourdeix
closed
9 years ago
8
Setup Readthedocs Webhooks
#13
jakirkham
closed
9 years ago
10
Feature/issue 11
#12
jakirkham
closed
9 years ago
1
Doc cleanup
#11
jakirkham
closed
9 years ago
0
Feature/issue 9
#10
jakirkham
closed
9 years ago
0
setup.py cleanup
#9
jakirkham
closed
9 years ago
0
Trying to start cosmos shell
#8
jakirkham
closed
9 years ago
4
Add a Gitter chat badge to README.rst
#7
gitter-badger
closed
9 years ago
1
1.0.15, cosmos/graph/draw.py: 'DiGraph' object has no attribute 'layout'
#6
crl9k
closed
9 years ago
1
Document the web-interface
#5
yassineS
closed
9 years ago
0
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