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MoTrPAC / motrpac-frontend

User interface and Frontend for MoTrPAC Bioinformatics Center
MIT License
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Connects to #214. Connects to #215. Connects to #223. New version of portal with public access to PASS1B-06 data. #225

Closed jimmyzhen closed 1 year ago

jimmyzhen commented 1 year ago

Key Changes:

  1. Converted components from protected access to public access, such as DEA search, data file downloads, gene-centric view, graphical clustering. Except file downloads, the other 3 components only offer access to PASS1B-06 data.
  2. Anonymous users and authenticated external users only have access to PASS1B-06 data via the file downloads component, while authenticated consortium users have access to both PASS1B-06 and PASS1A/1C-06 data via the file downloads component.
  3. A publicly accessible component was added to list the links to a variety of publicly accessible GitHub repositories pertinent to PASS1B-06 data pipelines, QC and analysis.
  4. A downloadable somalogic metadata file was added to the HERITAGE related study page.
  5. "Vena Cava" was added to the tissue filter on the file downloads, DEA search, Gene-centric View components.
  6. Typeahead feature was added to the Gene-centric View search, as well as the DEA search by gene/metabolite.
  7. Gene-centric View supports the search and time-series plots of multiple genes.
  8. DEA search component supports the search of either multiple genes or multiple metabolites.
  9. Search filters are disabled if the returned search results do not include data matching the filters.
  10. A collection of bundled PASS1B-06 data sets was added to file downloads page.
  11. The "Update results" button was moved to be above the filter panels on the DEA search and Gene-centric View pages.
  12. A link to the external, publicly accessible graphical clustering data visualization too was added.
  13. Primary navigation bar has been relocated to the top from the side, for the purpose of keeping the overall page UIs consistent among authenticated and non-authenticated users.
  14. For authenticated external users, they can now access the PASS1B-06 data sample summary, in addition to the limited PASS1A-06 data samples, upon their successful logins to the portal.
jimmyzhen commented 1 year ago

@cteng585 The first 3 bullet points you reported have been addressed. Please try again and let me know.

The last bullet point is odd indeed. Would you mind listing the steps to reproduce it? Thank you.

jimmyzhen commented 1 year ago

@cteng585 which HERITAGE link did you click on via the data hub portal that led to the 403 error?

jimmyzhen commented 1 year ago

@cteng585, as far as the not-so-intuitive behavior of the DEA search page, aka the landing page upon logging into the portal, it will be very likely re-designed to improve the user experience, such as combining the Gene-centric View as David Amar suggested previously.

For this PR, this page is not exactly broken, and as you pointed out, it's been present in production. I will create a ticket to handle this behavior as an enhancement rather than a bug.