This is an umbrella repository to store Funke-lab pipelines for Neuron Segmentation Local Shape Descriptors (Sheridan et al. 2022), Synapse Detection Synful(Buhmann et al. 2020) and Microtubule tracking Micron (Eckstein et al. 2019). We provide access to revived and refactored code via docker containers.
Pytorch implementations of the above codebases are WIP.
PLEASE NOTE THIS IS UNDER HEAVY DEVELOPMENT. CHECK THE DEV BRANCHES!