Feature/rewrite_frame_gen

[galjos]

Added a more efficient indexing and benchmarks for the read method. Included benchmarks of window and frame generator.

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 80.52%. Comparing base (f3d20b3) to head (f48a339). Report is 16 commits behind head on dev.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## dev #66 +/- ## ========================================== + Coverage 80.29% 80.52% +0.23% ========================================== Files 122 122 Lines 4826 4899 +73 ========================================== + Hits 3875 3945 +70 - Misses 951 954 +3 ``` | [Flag](https://app.codecov.io/gh/MolarVerse/PQAnalysis/pull/66/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=MolarVerse) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/MolarVerse/PQAnalysis/pull/66/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=MolarVerse) | `80.52% <100.00%> (+0.23%)` | :arrow_up: | | [Files](https://app.codecov.io/gh/MolarVerse/PQAnalysis/pull/66?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=MolarVerse) | Coverage Δ | | |---|---|---| | [PQAnalysis/io/traj\_file/trajectory\_reader.py](https://app.codecov.io/gh/MolarVerse/PQAnalysis/pull/66?src=pr&el=tree&filepath=PQAnalysis%2Fio%2Ftraj_file%2Ftrajectory_reader.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=MolarVerse#diff-UFFBbmFseXNpcy9pby90cmFqX2ZpbGUvdHJhamVjdG9yeV9yZWFkZXIucHk=) | `98.83% <100.00%> (+0.08%)` | :arrow_up: | ... and [10 files with indirect coverage changes](https://app.codecov.io/gh/MolarVerse/PQAnalysis/pull/66/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=MolarVerse)

[97gamjak]

I did change the base branch from main to dev

[github-actions[bot]]

PYLINT REPORT

Your code has been rated at 9.52/10 (previous run: 9.85/10, -0.33)

Full report

Raw metrics =========== |type |number |% |previous |difference | |----------|-------|------|---------|-----------| |code |7719 |39.96 |7616 |+103.00 | |docstring |8491 |43.96 |8423 |+68.00 | |comment |264 |1.37 |261 |+3.00 | |empty |2841 |14.71 |2800 |+41.00 | Duplication =========== | |now |previous |difference | |-------------------------|------|---------|-----------| |nb duplicated lines |0 |0 |0 | |percent duplicated lines |0.000 |0.000 |= | Messages by category ==================== |type |number |previous |difference | |-----------|-------|---------|-----------| |convention |1 |2 |2 | |refactor |51 |51 |51 | |warning |10 |12 |12 | |error |31 |0 |0 | Messages ======== |message id |occurrences | |--------------------------------|------------| |possibly-used-before-assignment |30 | |too-many-arguments |18 | |too-many-instance-attributes |10 | |inconsistent-return-statements |9 | |fixme |9 | |too-many-locals |3 | |too-complex |3 | |duplicate-code |3 | |too-many-branches |2 | |unused-argument |1 | |too-many-statements |1 | |too-many-return-statements |1 | |too-many-public-methods |1 | |too-many-lines |1 | |no-member |1 |