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Molmed
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sisyphus
Pipeline scripts for processing and QC of Illumina HiSeq and MiSeq data
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add new miseq ID
#155
slohse
closed
5 years ago
1
BIO-1649: Do not stage projects
#154
matrulda
closed
5 years ago
0
Skip index fastqs in aeacus scripts
#153
matrulda
closed
6 years ago
1
Sisyphus dev
#152
sarek928
closed
6 years ago
0
Extended amount of cores för aeacus-stats.pl
#151
sarek928
closed
6 years ago
0
Sisyphus dev
#150
matrulda
closed
7 years ago
0
Now the correct gnuplot version is loaded for project reports
#149
matrulda
closed
7 years ago
1
Sisyphus-dev
#148
matrulda
closed
7 years ago
0
Gnuplot hotfix
#147
matrulda
closed
7 years ago
0
Sisyphus dev
#146
matrulda
closed
7 years ago
0
Updated qc config according to INS-0123
#145
matrulda
closed
7 years ago
0
Disabled mail notifications about Arch jobs
#144
matrulda
closed
7 years ago
0
Bcl2fastq to report
#143
monikaBrandt
closed
7 years ago
1
Added useful info and instructions to the README
#142
matrulda
closed
7 years ago
2
Changed UPPMAX-project and removed qos-flag
#141
sarek928
closed
7 years ago
0
Updated QC-config and fixed "toolongtoprint" PDL-bug
#140
monikaBrandt
closed
7 years ago
1
Fix PDL bug
#139
matrulda
closed
7 years ago
3
Update qc config
#138
matrulda
closed
8 years ago
0
Sisyphus dev
#137
monikaBrandt
closed
8 years ago
0
Updated IndexCheck to display the ratio of an undetermined index in a lane
#136
monikaBrandt
closed
8 years ago
0
Sisyphus dev
#135
matrulda
closed
8 years ago
1
More resources given to slurmjobs
#134
matrulda
closed
8 years ago
3
No SweStore sync on irma and prevention of gzip prompt
#133
matrulda
closed
8 years ago
1
Force gzip and no sync to SweStore on Irma
#132
matrulda
closed
8 years ago
7
Sisyphus gives interactive challenge for aeacus-reports.pl
#131
johandahlberg
closed
8 years ago
1
Sisyphus dev
#130
matrulda
closed
8 years ago
0
HiSeqX runs are not uploaded to Swestore anymore
#129
matrulda
closed
8 years ago
1
IndexCheck cannot handle case where index is unknown (i.e no index)
#128
matrulda
opened
8 years ago
0
No config wait + IndexCheck enhancements
#127
matrulda
closed
8 years ago
4
Update for 2016 and minor bug fixes
#126
matrulda
closed
8 years ago
1
Faster fastq search
#125
matrulda
closed
8 years ago
2
getMachineID fails when using -miseq flag
#124
matrulda
closed
8 years ago
1
No need to search entire runfolder for fastq files
#123
johandahlberg
closed
8 years ago
2
No more sleep for Sisyphus
#122
matrulda
closed
8 years ago
1
Problem when masking one index
#121
matrulda
closed
8 years ago
1
Ignore missing fastqs
#120
matrulda
closed
9 years ago
0
Sisyphus dev
#119
matrulda
closed
9 years ago
0
add includes that will capture demux stats from X
#118
b97pla
closed
9 years ago
1
add includes that will capture demux stats from X
#117
b97pla
closed
9 years ago
1
Index check added. Can be done before or after demultiplexing.
#116
matrulda
closed
9 years ago
2
Index length is no longer calculated if index is "unknown"
#115
matrulda
closed
9 years ago
0
Sisyphus dev
#114
matrulda
closed
9 years ago
0
Fix bug with dual index
#113
Smeds
closed
9 years ago
3
Sisyphus dev
#112
Smeds
closed
9 years ago
1
Sisyphus now dies if there is no Data header in SampleSheet.csv
#111
matrulda
closed
9 years ago
0
ssverify.sh option
#110
matrulda
closed
9 years ago
1
Remove unaligned with clean script
#109
Smeds
closed
9 years ago
3
HiSeqX will not check reagent kiv version.
#108
Smeds
closed
9 years ago
0
Default value of lane will be 1 if lane column is missing.
#107
Smeds
closed
9 years ago
0
Default value of lane will be 1 if lane column is missing.
#106
Smeds
closed
9 years ago
1
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