MouseLand Kilosort issues

MouseLand / Kilosort

Fast spike sorting with drift correction

https://kilosort.readthedocs.io/en/latest/

GNU General Public License v3.0

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issues

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BUG: The shape of the mask [XXX] at index X does not match the shape of the indexed tensor

#770 Sepidak closed 2 months ago
2
Extracting Cluster Spiketimes

#769 AidanFishenden closed 2 months ago
8
Confirming Proper Use

#768 AidanFishenden closed 3 months ago
2
Slow running speed

#767 Tingchen-G closed 1 week ago
13
BUG: <Crash of Kilosort and/or computer during first clustering>

#766 ttmysd70c6f5 closed 1 week ago
21
BUG: <KS4 does not detect spikes when sorting recordings with one long line of channels on sequential banks>

#765 EricKenjiLee closed 1 week ago
13
GPU question

#764 HWWiggins closed 2 months ago
1
Creating a tuning curve using spike cluster and spike time data

#763 AidanFishenden closed 3 months ago
2
BUG: Kilosort3 Phy output has a wrong map if chanMap is not the default value

#762 Jialiang-Lu closed 1 month ago
2
Update basic_example.ipynb

#761 zhang3xing1 closed 3 months ago
0
How to increase spike window size

#760 1HosseinHeydari8 closed 3 months ago
1
QUESTION: Does KS4 implement catGT tshift?

#759 chris-angeloni closed 3 months ago
1
Fixed bug where cuda reserved memory climbs throughout process while allocated memory stays low

#758 Lathomas42 closed 3 months ago
3
Restrict template detection to individual shank (kilosort 4)

#757 Daruum closed 3 months ago
4
BUG: <Can't Run The Package>

#756 nacefguessaymi closed 3 months ago
1
Using Kilosort with HDF5 (.h5) files (from MultiChannelSystem)

#755 K-Mritunjay closed 3 months ago
3
Update README.md

#754 nacefguessaymi closed 3 months ago
3
template_matching.align_U changing shape of learned templates

#753 rachelmcassidy closed 2 months ago
3
How to create a single channel map

#752 AidanFishenden closed 3 months ago
3
BUG: <Kilosort4 Google Colab Example Data Sorting>

#751 ajcheng1 closed 3 months ago
1
Trying to convert data stored in a Mat File to Binary for Kilosort4, receiving Error concerning empty array

#750 AidanFishenden closed 3 months ago
2
BUG: ValueError related to "nt" paramater when running kilosort on Intan RHD file

#749 dshakey96 closed 3 months ago
9
BUG: Getting strange waveforms with KiloSort4 compared to KiloSort2

#748 MariaShuja closed 3 months ago
1
BUG: CUDA out of memory error with no other software open

#747 Lathomas42 closed 4 months ago
1
BUG: <CUDA out of memory>

#746 hemant22 closed 1 month ago
18
FEATURE: Applying Kilosort to Microwires in Human Hybrid Electrodes

#745 XiaoyuZeng closed 3 months ago
3
INSTALLATION: Segmentation fault (core dumped) during the initial call

#744 ekurtgl closed 4 months ago
4
BUG：GPU calling failure when starting first clustering

#743 Alchemist-Y closed 2 weeks ago
15
Bimodal amplitude distribution, nt and under-merging

#742 Tingchen-G closed 3 months ago
5
Jacob/output docs

#741 jacobpennington closed 3 months ago
0
BUG: CUDNN_STATUS_NOT_SUPPORTED error

#740 a-zmz closed 3 months ago
1
BUG: The expanded size of the tensor (60122) must match the existing size (60071) at non-singleton dimension 1. Target sizes: [112, 60122]. Tensor sizes: [112, 60071]

#739 JuanPimientoCaicedo closed 3 months ago
14
FEATURE: <Use saved templates from a model recording session to run kilosort on another session>

#738 mberns-ru closed 3 months ago
1
Running one Kilosort 4 session for two days and sometimes even crashed

#737 ZhongRenNeuroscience closed 3 months ago
3
[fix] bug in run_kilosort function

#736 jd730 closed 4 months ago
0
.rhs (intan) converter

#735 Lorena-J closed 4 months ago
0
BUG: <after splitting in phy the amp is not recomputed>

#734 zkcsmxz closed 4 months ago
2
BUG: pytorch not recognizing CUDA 12.4/12.5 drivers

#733 ryan-budde closed 4 months ago
4
After setting artifact_threshold I keep getting the "0 sample array error": ValueError: Found array with 0 sample(s) (shape=(0, 61)) while a minimum of 1 is required by TruncatedSVD.BUG: <Please replace this text with a comprehensive title>

#732 DanEgert closed 3 months ago
1
BUG: Kilosort runs quickly using GUI, but very slow using "run_kilosort.py"

#731 MShreyasStanford closed 3 months ago
7
Explanation for the output files

#730 zkcsmxz closed 3 months ago
1
Parameter Adjustment for 24-Channel Probe with 150 um Spacing and 40 kHz Sampling Rate

#729 Yirat-he closed 3 months ago
7
FEATURE: Upgrade kilosort without reinstalling it?

#728 NirvikNU closed 5 months ago
1
waveform duration, minimum firing rate and high pass filter cutoff

#727 dmitriivasilev closed 4 months ago
4
How to save filtered and whitened data from command prompt?

#726 hiroyukioya closed 5 months ago
2
Running Kilosort4 is very slow.

#725 yyyaaaaaaa closed 3 months ago
6
Kilosort4 runs into Zero Division Error - float division by zero

#724 Sfrap99 closed 4 months ago
9
Sorting a subset of channels (Kilosort4)

#723 a-savoy closed 5 months ago
1
NumPy 2.0 compatibility

#722 jacobpennington opened 5 months ago
0
pytest --run slow gives urllib.error.HTTPError: HTTP Error 403: Forbidden

#721 Idavr closed 5 months ago
3

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