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MrOlm
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drep
Rapid comparison and dereplication of genomes
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dockerfile
#241
ParsaGhadermazi
opened
1 day ago
0
Dead URLs for the Mash, gANI, Prodigal dependencies in the README
#240
yurivict
opened
1 week ago
0
current version numbers don't match
#239
rrohwer
opened
3 weeks ago
0
fix: pass threads to mash sketch
#238
rroutsong
opened
1 month ago
0
Singularity image
#237
joao1980
opened
1 month ago
0
assert os.path.isfile(genome), "{0} is not a file".format(genome) AssertionError: ......./b1.fasta is not a file
#236
Joedhy
closed
2 months ago
2
Contrast of text in dendograms
#235
danpal96
opened
3 months ago
1
checkM failed, properly related HMM file
#234
CujoChenFuyoh
closed
3 months ago
1
checkM overwriting itself?
#233
biojiangke
closed
3 months ago
4
ValueError: mash isn't working- make sure its installed
#232
soojunglee98
closed
3 months ago
2
file exists but get os.path.isfile(genome), "{0} is not a file".format(genome) error
#231
AprilJauhal
closed
5 months ago
10
Question abunt the output of dRep
#230
quliping
closed
3 months ago
1
stuck on checkm
#229
francesco-ricci
closed
5 months ago
1
dRep: Argument list too long
#228
jianhuang525
closed
3 months ago
3
drep conda installation dependencies
#227
Rridley7
opened
6 months ago
4
3.5.0
#226
MrOlm
closed
7 months ago
0
drep stoped during clustering
#225
Wanli-HE
closed
8 months ago
9
Is there any plan to add skani as ANI calculation method?
#224
ilnamkang
closed
7 months ago
2
Issue with ANImf: 0% ANI despite similar nucleotide sequences
#223
vsanchez0
closed
8 months ago
11
extra_weight_table flag
#222
reenadebray
closed
7 months ago
3
Halt: the pair-wise MASH clustering step
#221
RChGO
closed
7 months ago
6
Steps to implement checkm2 quality report to dRep
#220
mpdoane2
opened
9 months ago
8
Drep error with fastANI
#219
pengfeimm
closed
8 months ago
2
Drep error with fastANI
#218
pengfeimm
closed
9 months ago
1
Inquiry on Optimal Workflow for Metagenomic Binning and Dereplication
#217
rzhan186
closed
8 months ago
2
Inquiry Regarding dRep Dereplication Process and Result Validity
#216
rzhan186
closed
8 months ago
2
Extremely slow on cluster
#215
schmittel
closed
7 months ago
1
Cannot plot winner genome plots
#214
yqy6611
closed
7 months ago
3
The max process of the dRep
#213
MingyueCheng
closed
7 months ago
6
Empty distance matrix error
#212
MundaneAD
closed
10 months ago
4
Module Not Found Error_sqlite3
#211
jojyjohn28
closed
10 months ago
3
FastANI file not found error
#210
kevinmyers
closed
11 months ago
12
UnboundLocalError: local variable 'c2ret' referenced before assignment
#209
schmidoletti
closed
7 months ago
5
Cannot locate the program checkm-
#208
sakuragi0109
closed
1 year ago
3
How do Ns in scaffolds affect clustering?
#207
krausfeldtle
closed
7 months ago
1
--genomeInfo
#206
Sumsarium
closed
1 year ago
4
【BUG】 new version can not run properly
#205
ruoyu1123
closed
1 year ago
1
dRep FastANI Version
#204
mscarbor
closed
1 year ago
2
ValueError: fastANI isn't working-
#203
marina-vn
closed
7 months ago
6
Failure to plot secondary clustering plots
#202
etd530
opened
1 year ago
6
checkM Error
#201
SevanEsaian
closed
1 year ago
5
MASH clustering error during the execution of dRep
#200
MrAli1582
closed
1 year ago
2
fastANI FileNotFoundError
#199
yihualiued
closed
1 year ago
1
Microbial eukaryotic genome dereplication
#198
ganiatgithub
closed
1 year ago
1
Error when I run dRep
#197
yuanpingdu
closed
1 year ago
6
Error running dRep on large set of genomes
#196
MonaLiu421
closed
1 year ago
3
Remove redundancy from the eukaryotic genomes
#195
weiguanyue
closed
1 year ago
7
Pivot function calls do not match changes made in Pandas v2
#194
alexhbnr
closed
1 year ago
1
Adding -sa 0.99 changes results despite being the default in documentation- 0.95 may be the real default?
#193
Chiron-bio
closed
1 year ago
6
genome with >0.99 ANI and 1 aligned fraction in different secondary clusters
#192
chassenr
closed
7 months ago
5
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