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MrOlm
/
inStrain
Bioinformatics program inStrain
MIT License
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pNpS_variants value
#188
ucassee
closed
5 days ago
4
instrain compare --bams for pooled_SNV
#187
Lyylsys
opened
3 weeks ago
5
command "instrain profile " export that some plots can't make
#186
Quzelei
opened
1 month ago
1
Detailed calculation of breadth (and coverage)
#185
anniewest
opened
1 month ago
3
instrain_compare clustering failure
#184
elisacaffrey
closed
1 month ago
5
unable to lock file, errno = 37, error message = 'No locks available'
#183
473021677
opened
1 month ago
2
Errors for Merging splits and profiling genes
#182
473021677
closed
1 month ago
2
Speed up inStrain compare by bypassing the extensive pandas.DataFrame subset extraction processes
#181
zhenjiaofenjie
closed
1 month ago
3
instrain profile step3
#180
Biofarmer
closed
1 month ago
8
Questions about read coverage and breadth filtration.
#179
ChenTianYi99
opened
2 months ago
1
inStrain compare: {genome} is in input {input} but not the provided stb file
#178
Sanrrone
closed
2 months ago
5
How to calculate Tajima'D or fixation indices (FST) using inStrain files?
#177
ChenTianYi99
opened
3 months ago
1
How to calculate Tajima'D or fixation indices (FST) using inStrain files?
#176
ChenTianYi99
closed
3 months ago
0
How should one interpret genes displaying a high pN value alongside a pS value of 0
#175
haihao999
opened
3 months ago
1
inStrain Profile freeze - OSError: truncated file
#174
havi-rojer
closed
2 months ago
2
The number of synonymous and non synonymous sites is not an integer
#173
Bioinformations
closed
3 months ago
0
what`s the meaning of the no data between the gene
#172
lori1996
opened
3 months ago
3
phylogenetic analysis of a selected bacterium in different sample
#171
luoqingqing777
closed
3 months ago
0
Inconsistency between results of “inStrain quick_profile” and “inStrain profile"
#170
haihao999
closed
3 months ago
1
Inconsistent order of columns in output file *_genome_info.tsv
#169
yunkit
opened
3 months ago
1
calculations at the single-bacterial level
#168
dzxiaona
closed
3 months ago
1
inStrain profile not profiling all genes
#167
rebeccasophiasalcedo
closed
4 months ago
7
clarity regarding strain_clusters.tsv
#166
ShailNair
closed
6 months ago
2
about inStrain profile with KeyError: 'version'
#165
ZT-ls
closed
7 months ago
11
inStrain compare - output
#164
marina-vn
opened
8 months ago
9
DEBUG:no_length will not be considered as part of the genime
#163
Xiaoxin9115
opened
8 months ago
3
Issue in statistical analysis of nucleotide diversity.
#162
ChenTianYi99
opened
8 months ago
2
SNP calling naive question
#161
ntromas
opened
8 months ago
5
genes with allele frequency differences
#160
haihao999
opened
9 months ago
2
Enquiry about "codecs.py" and strain relative abundance
#159
jiangys30
opened
9 months ago
3
Missing columns in "genome_info.tsv" output
#158
etd530
closed
10 months ago
3
how the instrain should be tuned for a reference genome consisting of high relative abundance strains？
#157
adobe7105
closed
10 months ago
3
inStrain plot not generating plots 2 and 7
#156
cusoiv
closed
11 months ago
9
How to calculate the pN/pS value of similar function genes
#155
haihao999
closed
12 months ago
1
AttributeError: module 'numpy' has no attribute 'bool'.
#154
HaimAshk
closed
12 months ago
6
a problem that has stations with different grain sizes
#153
haihao999
closed
1 year ago
0
updata docker versin
#152
adobe7105
closed
1 year ago
2
inStrain compare KeyError: 'covT'
#151
marina-vn
closed
1 year ago
11
Problem with installation using Docker
#150
camilagazolla
closed
1 year ago
1
Same concept with amplicons?
#149
liamfitzstevens
closed
1 year ago
1
inStrain compare sometimes hanging up
#148
cusoiv
opened
1 year ago
13
isntallation problem
#147
Elennona
closed
1 year ago
1
>8h for`Step 2. Profile scaffolds`
#146
liamfitzstevens
closed
1 year ago
4
merging custom genomes with an existing genome database using drep "-extraW "
#145
yan1365
closed
1 year ago
2
Indexing error in IS_gene_info.tsv
#144
Winshipe
closed
1 year ago
3
Optimal dRep %; run dRep on both isolates and MAGs?
#143
liamfitzstevens
closed
1 year ago
2
Genome breadth of coverage
#142
Liuyuxinn
closed
1 year ago
1
Troubleshooting inStrain profile Step 2. Profile scaffolds
#141
jmartin77777
closed
1 year ago
3
samtools left out of v1.7.1 pip installation
#140
rrohwer
closed
1 year ago
1
Error trying to install pysam when installing instrain
#139
dzjian2
closed
1 year ago
3
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