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Murali-group
/
BoolODE
Git Repo for simulating Boolean Models
GNU General Public License v3.0
32
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15
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Fixes for Slingshot Dockerfile and other various minor bugs
#25
yutuyt01
opened
2 months ago
0
Option parser for Slingshot only takes first letter from argument and discards the rest
#24
yutuyt01
opened
3 months ago
2
BoolODE errors when running jobs in parallel
#23
yutuyt01
opened
3 months ago
1
Slingshot Dockerfile has outdated OpenPGP key for R package install
#22
yutuyt01
opened
3 months ago
0
Bump scipy from 1.2.1 to 1.10.0
#21
dependabot[bot]
opened
1 year ago
0
Simulate Perturbations
#20
aminjaber
opened
1 year ago
3
Problem running boolode
#19
persa-alt
closed
1 year ago
4
Bump numpy from 1.16.2 to 1.22.0
#18
dependabot[bot]
opened
2 years ago
0
Expose parameter noiseStrength to user
#17
amoghpj
opened
2 years ago
0
Updates to add clustering files
#16
neelspatel999
opened
2 years ago
0
Updates to example-config.yaml, model_generator.py, run_experiment.py, simulator.py, requirements.txt, .gitignore, beeline-inputs-boolean.yaml. Reorganized genVis.py
#15
mallenjon
opened
3 years ago
0
Create autonumclusters
#14
cbuck016
opened
3 years ago
0
Easy way to return derivatives?
#13
calebclayreagor
opened
3 years ago
3
'dict_keys' object is not subscriptable
#12
qinzhu
closed
3 years ago
2
Fixing rate parameters to defaults
#11
ghost
opened
4 years ago
1
Update script-to-generate-datasets.sh to use genSamples.py
#10
adyprat
opened
4 years ago
2
"Too many files open" error on Ubuntu
#9
amoghpj
opened
4 years ago
0
Disable plotting by default in runSlingshot.py
#8
matthieubulte
opened
4 years ago
0
Unable to successfully run Slingshot
#7
matthieubulte
opened
4 years ago
3
Use thread pool for simulation parallelization.
#6
matthieubulte
closed
4 years ago
1
Minor improvements on script-to-generate-datasets.sh
#5
matthieubulte
closed
4 years ago
0
Fix scitkit-learn dependency in requirements.txt
#4
matthieubulte
closed
4 years ago
0
Add commandline option to sample random parameters
#3
amoghpj
closed
5 years ago
1
Implement time course perturbation
#2
amoghpj
closed
5 years ago
0
Re-do stochastic experiment if it fails
#1
adyprat
closed
5 years ago
1