Murali-group BoolODE issues

Murali-group / BoolODE

Git Repo for simulating Boolean Models

GNU General Public License v3.0

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issues

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Fixes for Slingshot Dockerfile and other various minor bugs

#25 yutuyt01 opened 5 months ago
0
Option parser for Slingshot only takes first letter from argument and discards the rest

#24 yutuyt01 opened 6 months ago
2
BoolODE errors when running jobs in parallel

#23 yutuyt01 opened 6 months ago
1
Slingshot Dockerfile has outdated OpenPGP key for R package install

#22 yutuyt01 opened 6 months ago
0
Bump scipy from 1.2.1 to 1.10.0

#21 dependabot[bot] opened 1 year ago
0
Simulate Perturbations

#20 aminjaber opened 1 year ago
3
Problem running boolode

#19 persa-alt closed 1 year ago
4
Bump numpy from 1.16.2 to 1.22.0

#18 dependabot[bot] opened 2 years ago
0
Expose parameter noiseStrength to user

#17 amoghpj opened 3 years ago
0
Updates to add clustering files

#16 neelspatel999 opened 3 years ago
0
Updates to example-config.yaml, model_generator.py, run_experiment.py, simulator.py, requirements.txt, .gitignore, beeline-inputs-boolean.yaml. Reorganized genVis.py

#15 mallenjon opened 3 years ago
0
Create autonumclusters

#14 cbuck016 opened 3 years ago
0
Easy way to return derivatives?

#13 calebclayreagor opened 4 years ago
3
'dict_keys' object is not subscriptable

#12 qinzhu closed 4 years ago
2
Fixing rate parameters to defaults

#11 ghost opened 4 years ago
1
Update script-to-generate-datasets.sh to use genSamples.py

#10 adyprat opened 5 years ago
2
"Too many files open" error on Ubuntu

#9 amoghpj opened 5 years ago
0
Disable plotting by default in runSlingshot.py

#8 matthieubulte opened 5 years ago
0
Unable to successfully run Slingshot

#7 matthieubulte opened 5 years ago
3
Use thread pool for simulation parallelization.

#6 matthieubulte closed 5 years ago
1
Minor improvements on script-to-generate-datasets.sh

#5 matthieubulte closed 5 years ago
0
Fix scitkit-learn dependency in requirements.txt

#4 matthieubulte closed 5 years ago
0
Add commandline option to sample random parameters

#3 amoghpj closed 5 years ago
1
Implement time course perturbation

#2 amoghpj closed 5 years ago
0
Re-do stochastic experiment if it fails

#1 adyprat closed 5 years ago
1