NBISweden GUESSmyLT issues

NBISweden / GUESSmyLT

An efficient way to guess the library type of your RNA-Seq data.

GNU General Public License v3.0

29 stars 4 forks source link

issues

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fix miss-handling check of the samtools versions to prepare the correct command

#24 Juke34 closed 2 years ago
0
cannot install with conda on Ubuntu 20.04 nor 22.04

#23 julienlag opened 2 years ago
2
Samtools version check for sort command fails, tries to use `-f`

#22 Shellfishgene closed 2 years ago
2
Singularity container does not work due to read only filesystem

#21 Shellfishgene opened 2 years ago
1
No match found betwwen sequence id from the bam file and the reference file

#20 papelypluma closed 3 years ago
10
Installed BUSCO is detected to be missing

#19 yifangt opened 3 years ago
3
hmmsearch Parse failed ...

#18 papelypluma closed 3 years ago
8
error

#17 liaguiro closed 2 years ago
12
Error. No genes could be found in --annotation

#16 LehmannN closed 4 years ago
4
result interpretation

#15 Homap closed 4 years ago
3
Error in bowtie2_index

#14 Homap closed 4 years ago
7
Provide a docker container

#13 jpfeil closed 4 years ago
1
Deal with different samtools version

#12 Juke34 closed 5 years ago
0
cannot run with only fastq file

#11 mistrm82 closed 5 years ago
2
error with using the GUESSmyLT.py

#10 mistrm82 closed 5 years ago
5
providing way to give index of the bam file

#9 Juke34 opened 5 years ago
0
Provide mean distance between paired reads

#8 Juke34 opened 5 years ago
0
find a way to call run_BUSCO.py instead of run_busco when needed

#7 Juke34 closed 5 years ago
1
adapt the samtools sort command to work with ancient version of bowtie

#6 Juke34 closed 5 years ago
1
Optimize BUSCO for transcriptome reference

#5 Juke34 opened 5 years ago
0
Logging of last step, Inference

#4 Juke34 opened 5 years ago
0
Improve how reads are selected during the Subsampling

#3 Juke34 opened 5 years ago
0
Handling external annotation file (gff)

#2 Juke34 closed 5 years ago
0
Handling of pre-mapped reads (bam file)

#1 Juke34 closed 5 years ago
0